View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_25 (Length: 495)
Name: NF11651_low_25
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 48 - 479
Target Start/End: Original strand, 34801046 - 34801460
Alignment:
| Q |
48 |
gttggtcgcatccttcaatctctattgttactaaagcgggaagacgagttggcaaatttccccgtaatcacaggaaaagaagcatatgactcatggggat |
147 |
Q |
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| T |
34801046 |
gttggtcgcatccttcaatctctattgttactaaagcgggaagacgagttggcaaatttccccgtaatcacaggaaaagaagcatatgactcatggggat |
34801145 |
T |
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| Q |
148 |
gatgccacacttcccaagatgacgacgtatcatcaaacatcagattttcaagggaggtaaaaggtgtatcagaagagtaatcaccgttcttgaaaaattc |
247 |
Q |
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| T |
34801146 |
gatgccacacttcccaagatgacgacgtatcatcaaacatcagattttcaagggaggtaaaaggtgtatcagaagagtaatcaccgttcttgaaaaattc |
34801245 |
T |
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| Q |
248 |
aggtccaatagtcttgagagagcttatttgtcc-aagcgatggaagcataaaacaattcttacaaccatacaaagatcttcaacccattctggaaatctt |
346 |
Q |
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| T |
34801246 |
aggtccaatagtcttgagagagcttatttgtccaaagcgatggaagcataaaacaattcttacaaccatacaaagatcttcaacccattctggaaatctt |
34801345 |
T |
|
| Q |
347 |
gtgccttttcaggtacttggcaggctgtaacttgcatagtatatccatctcattttgtgaattttcaacatcgtctgcagcatcttcagaccattccaac |
446 |
Q |
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| T |
34801346 |
gtgcct------------------ctgtaacttgcatagtatatccatctcattttgtgaattttcaacatcgtctgcagcatcttcagaccattccaac |
34801427 |
T |
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| Q |
447 |
tccaattcctcaaggtacttcttatctattatc |
479 |
Q |
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| T |
34801428 |
tccaattcctcaaggtacttcttatctattatc |
34801460 |
T |
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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 4248539 - 4248443
Alignment:
| Q |
19 |
ggaaggagcccttgggagagacgaagcaagttggtcgcatccttcaatctctattgttactaaagcgggaagacgagttggcaaatttccccgtaat |
115 |
Q |
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| T |
4248539 |
ggaaggagcctttgggagagaagaagcaagttgattgcatcgttcaatctcaattgtttccaaagcaggaagatgagttggtaaatctccccgtaat |
4248443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 4255448 - 4255401
Alignment:
| Q |
117 |
acaggaaaagaagcatatgactcatggggatgatgccacacttcccaa |
164 |
Q |
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| T |
4255448 |
acaggaaaagaagcatatgaatcatggggatgatgccacacttgccaa |
4255401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 4255206 - 4255158
Alignment:
| Q |
362 |
cttggcaggctgtaacttgcatagtatatccatctcattttgtgaattt |
410 |
Q |
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| T |
4255206 |
cttggaaggctgtaatttgcaaagtatatccatttcactttgtgaattt |
4255158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 41934657 - 41934605
Alignment:
| Q |
356 |
caggtacttggcaggctgtaacttgcatagtatatccatctcattttgtgaat |
408 |
Q |
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| T |
41934657 |
caggtacttggcaggctgtaacttgcacagtatatccatctcactttgcgaat |
41934605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 41934903 - 41934835
Alignment:
| Q |
194 |
ttcaagggaggtaaaaggtgtatcagaagagtaatcaccgttcttgaaaaattcaggtccaatagtctt |
262 |
Q |
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| T |
41934903 |
ttcaagggagggaaaaggtgtctctgaaaacgaatcaccaatcttgaaaaattcagatccaataatctt |
41934835 |
T |
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