View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_low_26 (Length: 468)
Name: NF11651_low_26
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 6462390 - 6462838
Alignment:
| Q |
1 |
gacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttatnnnnnnnntggaagacaataagaaagctgatgagaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6462390 |
gacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttataaaaaaaatggaagacaataagaaagctgatgagaagga |
6462489 |
T |
|
| Q |
101 |
agaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaaatgttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6462490 |
agaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaaatgttggt |
6462589 |
T |
|
| Q |
201 |
aggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatgataaattgtgagaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6462590 |
aggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatgataaattgtgagaag |
6462689 |
T |
|
| Q |
301 |
aaacttaggttaaggaaactatgaatgtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatggaagaaaagagtaaccctcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
6462690 |
aaacttaggttaaggaaactatgaatgtaaagaagagagagaaattattgaagctaagaaatccgaattagaagtcatggaagaagagagtatccctcaa |
6462789 |
T |
|
| Q |
401 |
gacatagatcgggacaatgaaaaggagaaaaatcaagagaggacggatt |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6462790 |
aacatagatcgggacaatgaaaaggagaaaaatcaagagagggcggatt |
6462838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 438
Target Start/End: Original strand, 42252346 - 42252436
Alignment:
| Q |
348 |
ttgaagctaagaaatccgaattagaagtcatggaagaaaagagtaaccctcaagacatagatcgggacaatgaaaaggagaaaaatcaaga |
438 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| || |||| |||||| ||| || || |||||||||||||| |||||| |
|
|
| T |
42252346 |
ttgaagctaagaaacccgaattagaagtcatggaagaagagattatccctgaagacaacgatgagggcagtgaaaaggagaaaagtcaaga |
42252436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 42252149 - 42252209
Alignment:
| Q |
132 |
ggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaa |
192 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
42252149 |
ggaaggaataaaagaggataagaaagttgatgaagggaaagaaacaaaagaggatgagaaa |
42252209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 41847894 - 41847959
Alignment:
| Q |
327 |
gtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatggaagaaaagagta |
392 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||| | |||||| ||| |||||| |
|
|
| T |
41847894 |
gtaaagaagagagagaaagcgttgaagctaagaagcctgaattagatgccatggatgaagagagta |
41847959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 42252239 - 42252292
Alignment:
| Q |
232 |
attttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatg |
285 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
42252239 |
attttgtgaatgaaacagaagaaaataagaaaaatgatcatgggtttgaggatg |
42252292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University