View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_27 (Length: 456)
Name: NF11651_low_27
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_27 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Original strand, 39933987 - 39934434
Alignment:
| Q |
9 |
agcagagatgcaatgtatgtcacaaataatctacatcaagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39933987 |
agcacagatgcaatgtatgtcacaaataatctacatccagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
39934086 |
T |
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| Q |
109 |
atttctcatctaagtgaaaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
208 |
Q |
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| T |
39934087 |
atttctcatctaagtgacaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
39934186 |
T |
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| Q |
209 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
308 |
Q |
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| T |
39934187 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
39934286 |
T |
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| Q |
309 |
tcatagaatgtaggagagaagaacttatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcata |
408 |
Q |
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| T |
39934287 |
tcatagaatgtaggagagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcata |
39934386 |
T |
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| Q |
409 |
tttgtaagaaatagagcccagtaaataatacacaaagttgatagctcc |
456 |
Q |
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| T |
39934387 |
tttgtaagaaatagagcacagtaaataatacacaaagttgatagctcc |
39934434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 39704652 - 39704588
Alignment:
| Q |
392 |
tcttaaatatcttcatatttgtaagaaatagagcccagtaaataatacacaaagttgatagctcc |
456 |
Q |
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| T |
39704652 |
tcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctcc |
39704588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 39695732 - 39695679
Alignment:
| Q |
403 |
ttcatatttgtaagaaatagagcccagtaaataatacacaaagttgatagctcc |
456 |
Q |
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| T |
39695732 |
ttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctcc |
39695679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 39928648 - 39928688
Alignment:
| Q |
305 |
tttttcatagaatgtaggagagaagaacttatcatcattat |
345 |
Q |
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| T |
39928648 |
tttttcatagaatgtaggagaaaagaacttattaccattat |
39928688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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