View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_28 (Length: 441)
Name: NF11651_low_28
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 32315518 - 32315927
Alignment:
| Q |
16 |
gaatgttcacccaaaaataaattatttagtaattatgtttggttgaaaatgcaaaaacctagtcnnnnnnnnnnnntccataccatgataatggctttga |
115 |
Q |
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| T |
32315518 |
gaatgttcacccaaaaataaattatttagtaattatgtgtggttgaaaatgcaaaaacctagtcaaaaaaatata-tacataccatgataatggctttga |
32315616 |
T |
|
| Q |
116 |
tgttatctctggtgagtttgatggagttatgaagatcatccgattcattttctactttagcttcatcactgtaaaaagccaacaattcatcaaccatatc |
215 |
Q |
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| T |
32315617 |
tgttatctctggtgagtttgatggagttatgaagatcatccgattcattttctactttagcttcatcactgtaaaaagccaacaattcatcaaccatatc |
32315716 |
T |
|
| Q |
216 |
actatcttcatcaccactcatattcctcttcttctctacatgttcatcaaaaatcttatcaataaaaccatccaacgcaccacgagccttaacaagccta |
315 |
Q |
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| T |
32315717 |
actatcttcatcaccactcatattcctttttttctctacatgttcatcaaaaatcttatcaataaaaccatccaacgcaccacgagccttaacaagccta |
32315816 |
T |
|
| Q |
316 |
tcattaaaaccttgaggatcaacccacttcaaacaaggaacaaaatccgcaatattaaaagcaccaaacaatttcgaaaactcttgaagtatcgaaatga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32315817 |
tcattaaaaccttgaggatcaacccacttcaaacaaggaacaaaatccgcaatattaaaagcaccaaacaatttcgaaaactcttgaagtatcgaaatga |
32315916 |
T |
|
| Q |
416 |
actcatcttgt |
426 |
Q |
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| T |
32315917 |
actcatcttgt |
32315927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 426
Target Start/End: Complemental strand, 8260154 - 8259825
Alignment:
| Q |
94 |
cataccatgataatggctttgatgttatctctggtgagtttgatggagttatgaagatcatccgattcattttctactttagcttcatcactgtaaaaag |
193 |
Q |
| |
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||||||||||| ||||||||||| ||||| |||| |||||||| || |||| | |||||| |||||||| | | ||||||||| || || || |||| |
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| T |
8260154 |
cataccatgatgatggctttgatattatccttggtaagtttgatagaattattcaaatcatctgattcattattcaatttagcttcctcgctatagaaag |
8260055 |
T |
|
| Q |
194 |
ccaacaattcatcaaccatatcactatcttcatcaccactcatattcctcttcttctctacatgttcatcaaaaatcttatcaataaaaccatccaacgc |
293 |
Q |
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| T |
8260054 |
caagcaactcatccaccatatccgtttcttcatcaaca---acactcttcttcttctgcacatgttcatctatgattttgtctatgaaactatccaattc |
8259958 |
T |
|
| Q |
294 |
accacgagccttaacaagcctatcattaaaaccttgaggatcaacccacttcaaa-caaggaacaaaatccgcaatattaaaagcaccaaacaatttcga |
392 |
Q |
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||||||||| ||||||||| |||||| ||||||||||||| || |||| ||||| |||||||| | |||||||||||| ||||||||||| || |
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| T |
8259957 |
tttacgagccttcacaagcctagcattaagcccttgaggatcaatag-ctccaaagcaaggtacaaaatcagaaatattaaaagctccaaacaatttgga |
8259859 |
T |
|
| Q |
393 |
aaactcttgaagtatcgaaatgaactcatcttgt |
426 |
Q |
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||||||||| | ||| ||| |||||||||||| |
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|
| T |
8259858 |
aaactcttgcaatattccaataaactcatcttgt |
8259825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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