View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_low_32 (Length: 404)

Name: NF11651_low_32
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_low_32
NF11651_low_32
[»] chr6 (12 HSPs)
chr6 (1-391)||(8289742-8290132)
chr6 (4-185)||(8257035-8257216)
chr6 (4-185)||(8259343-8259524)
chr6 (305-391)||(8257440-8257526)
chr6 (303-391)||(8259785-8259873)
chr6 (31-212)||(8308829-8309010)
chr6 (304-391)||(8309333-8309420)
chr6 (4-83)||(8324923-8325002)
chr6 (30-128)||(8312208-8312306)
chr6 (306-389)||(8262857-8262940)
chr6 (309-360)||(8325364-8325415)
chr6 (4-82)||(8261931-8262009)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 8289742 - 8290132
Alignment:
Q  1 cccgtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaac 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8289742 cccgtgcacacaatactccccctaatgcgcccctccaccatagcatgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaac 8289841  T
Q  101 ggtctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctgagaataacat 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8289842 ggtctagttgggacatgtcgagtttcaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtgtgagaataacat 8289941  T
Q  201 aatttcatttctcttataatatttattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacccttgaaagatataggataggaaata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  8289942 aatttcatttctcttataatatttattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacgcttcaaagatataggataggaaata 8290041  T
Q  301 tttgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8290042 tttgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 8290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 8257035 - 8257216
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggt 103  Q
    ||||| || ||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||  |  ||||||||||    
T  8257035 gtgcatacgatactcccccttatgcgaccctccaccattgcacgtgctgcatgtttcacacacaacgccattccttgaacattgaccgcaaataaacggt 8257134  T
Q  104 ctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg 185  Q
    | | |||||||||||| |||||||  |  |||||||| || ||||||  |||||| |||||| |||||||||||||||||||    
T  8257135 caaattgggacatgtcaagttccatgattgtttgatcagtgggactagcgattccagcattgctgaacattatatctacctg 8257216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 8259343 - 8259524
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggt 103  Q
    ||||||||||| || ||||| | ||  ||||||||||| ||||| || || |||||||||||||||||||| || ||||||||||     ||||||||||    
T  8259343 gtgcacacaatgctccccctcacgctaccctccaccattgcacgcgccgcgtgtttcacacacaatgccatcccacgaacattgacgccaaataaacggt 8259442  T
Q  104 ctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg 185  Q
    | ||||||||||| || |||||||  || |||||||| || ||||||| |||||| |||||| |||||||||||||||||||    
T  8259443 caagttgggacatatcaagttccattactgtttgatctgtgggactaacgattccagcattgctgaacattatatctacctg 8259524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 8257440 - 8257526
Alignment:
Q  305 aacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    ||||||||||||||||| ||||||||||||||  || ||||||||||||||||| ||||  ||||||||||||||||| ||||||||    
T  8257440 aacctgtccataagtatcaaccgttgattgaactaggtttttgacttgatcttcatctgtgacatcgcagtggatgtaagtgcacct 8257526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 8259785 - 8259873
Alignment:
Q  303 tgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||    
T  8259785 tgaacctgtccataagtatctaccgttgatcgaacgagatttttgacttgatcttcatctgccacatcacaatggatgtaagtgcacct 8259873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 8308829 - 8309010
Alignment:
Q  31 ccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagttccaaca 130  Q
    ||||| ||||| ||||| || || |||||||||||||| | |||||| || |||||||  |  ||||||||||| ||||||||||| || |||||||  |    
T  8308829 ccctctaccattgcacgcgccgcgtgtttcacacacaacgacattccacggacattgacggcaaataaacggtcaagttgggacatatcaagttccatta 8308928  T
Q  131 cagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctgagaataacataatttcatttct 212  Q
      |||||| | || | ||||| |||||| |||||| ||||||| ||||| | ||| | ||||||||||| ||||||||||||    
T  8308929 ttgtttgagctgtggaactaatgattccagcattgctgaacatgatatccagctgttgtgagaataacaaaatttcatttct 8309010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 8309333 - 8309420
Alignment:
Q  304 gaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||  || || || |||||||||||||||||    
T  8309333 gaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcatctgtcacgtcacaatggatgtaggtgcacct 8309420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 8324923 - 8325002
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaac 83  Q
    ||||||||||| || ||||| | || ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  8324923 gtgcacacaatgctacccctcacgcacccgtccaccatcgcacgtgccgcatgtttcacgcacaatgccattcctcgaac 8325002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 8312208 - 8312306
Alignment:
Q  30 cccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagttccaa 128  Q
    |||||||||||| | |||||| ||||||||||| ||||||||||||||||| | ||| |||| ||||||| ||||   ||| || ||||||||||||||    
T  8312208 cccctccaccatcgaacgtgctgcatgtttcacgcacaatgccattcctcggatattaattgagaataaatggtcagcttgagaaatgtcgagttccaa 8312306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 8262857 - 8262940
Alignment:
Q  306 acctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcac 389  Q
    ||||||||||||| ||| || |||||||||| ||||||||| ||||||||||| | ||||| ||| || || ||||||||||||    
T  8262857 acctgtccataagcattgacagttgattgaacgagatttttaacttgatcttcatttgctatatcacaatgaatgtaggtgcac 8262940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 8325364 - 8325415
Alignment:
Q  309 tgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgt 360  Q
    |||||||||||||| || |||||||||| |||||||||||||||||||||||    
T  8325364 tgtccataagtattgactgttgattgaacgagatttttgacttgatcttcgt 8325415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 8261931 - 8262009
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaa 82  Q
    ||||||||||| || ||||| | ||||||||||||||| |||||||| || | |||||||||||||| | |||||||||    
T  8261931 gtgcacacaatgctacccctcacgcgcccctccaccatcgcacgtgccgcgtatttcacacacaatgtcgttcctcgaa 8262009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University