View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_low_33 (Length: 404)
Name: NF11651_low_33
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 49265317 - 49265021
Alignment:
| Q |
18 |
aagaactttatcaaattggttgaccctctacttcaaggtcgttgtccaatgggaggacttaaacaagcagttgctattgctgcaatgtgtgtgcaaacac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49265317 |
aagaactttatcaaattggttgaccctctacttcaaggtcgttgtccaatgggaggacttaaacaagcagttgctattgcggcaatgtgtgtgcaaacac |
49265218 |
T |
|
| Q |
118 |
aagcttctgcaaggcctctcattggtgaaattgtggatgcacttacatacatgaccagaactgactcatcacccaaattgaaaagatctatgatgattga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265217 |
aagcttctgcaaggcctctcattggtgaaattgtggatgcacttacatacatgaccagaactgactcatcacccaaattgaaaagatctatgatgattga |
49265118 |
T |
|
| Q |
218 |
gtgataagagtgatatttcaacatgggaaatgagcatcttagacccaaactctaaatatattacttcattcagctaattaaagaaaattcatgacaa |
314 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265117 |
gtgttaagagtgatatttcaacatgggaaatgagcatcttagacccaaactctaaatatattacttcattcagctaattaaagaaaattcatgacaa |
49265021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Complemental strand, 49264971 - 49264937
Alignment:
| Q |
359 |
atactcgcatatgaaccaaggatttatagattcat |
393 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
49264971 |
atactcgcatatgaactaaggatttatagattcat |
49264937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University