View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_38 (Length: 374)
Name: NF11651_low_38
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 39703931 - 39704278
Alignment:
| Q |
19 |
aaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaactc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39703931 |
aaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttggaatcctaccactatggagttcaagtatattcttagcaactc |
39704030 |
T |
|
| Q |
119 |
caatagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcccagctagttctgttgctgttat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| ||||| |||||| |||||||| ||||||| |
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| T |
39704031 |
caatagcaatccaaagtagtgtgacggtacttcaagctttagccatggatcgctcattaggaccccatttcaaaattccagctggttctgtttctgttat |
39704130 |
T |
|
| Q |
219 |
tgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaaaatcacttatgccgctccagcga |
318 |
Q |
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||| |||||||| || ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||| | | |||||| || || ||| |
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| T |
39704131 |
agtcataatatcaacatccattttcctcacctttcttgacagagtgctattgccatgttggcataagattactggaaaaacgcctatgccacttcaacga |
39704230 |
T |
|
| Q |
319 |
atatgagcaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39704231 |
ataggagtaggacatgtgttgactgttcttggcatggttgtctctgct |
39704278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 96 - 366
Target Start/End: Complemental strand, 39935019 - 39934749
Alignment:
| Q |
96 |
ttcaagtatattcttagcaactccaatagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatc |
195 |
Q |
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||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39935019 |
ttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatc |
39934920 |
T |
|
| Q |
196 |
ccagctagttctgttgctgttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaa |
295 |
Q |
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|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39934919 |
ccagctagttttgtttctgttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggca |
39934820 |
T |
|
| Q |
296 |
aatcacttatgccgctccagcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934819 |
aatcacttatgccgctccagcgaataggagcaggacatgtgttgactgttcttggcatggttgtctctgct |
39934749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 39695018 - 39695366
Alignment:
| Q |
18 |
aaaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaact |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||| | ||| |||||||||||||||||||||| |
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| T |
39695018 |
aaaatcatcatggagactatgcacagttcaacaagtggatgatttcaaaaaaataattggaatcctaccattgtggtcttcaagtatattcttagcaact |
39695117 |
T |
|
| Q |
118 |
ccaatagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcccagctagttctgttgctgtta |
217 |
Q |
| |
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|||||||||||||||||| | || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39695118 |
ccaatagcaatccaaagttgcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgtta |
39695217 |
T |
|
| Q |
218 |
ttgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattacc-ggaaaatcacttatgccgctccagc |
316 |
Q |
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| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| || ||| ||||||||||| ||||| ||||||| | |||||||||||| | |
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| T |
39695218 |
tagtcttgatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaat-gcctatgccgctccaac |
39695316 |
T |
|
| Q |
317 |
gaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695317 |
gaataggagcaggacatgtgttgactgttcttggcatggttgtctctgct |
39695366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 39929444 - 39929097
Alignment:
| Q |
19 |
aaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaactc |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| ||| ||| ||||| |||||| ||||||| ||||| || ||| || |
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| T |
39929444 |
aaatcatcatggagactatgcacaattcaacaagtggaagatttcaaaaaaatagttggaatattaccattatggacttcaagtctattcctatcaattc |
39929345 |
T |
|
| Q |
119 |
caatagcaatccaaa-gtagtgtgacggtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcccagctagttctgttgctgtta |
217 |
Q |
| |
|
|||||| ||| |||| | | | | | ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||| || |||||| |
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|
| T |
39929344 |
caatagtaatgcaaatggact-tcattatacttcaagctttagtcatggatcgttctttaggataccattttgaaatcccagctggttctatttctgtta |
39929246 |
T |
|
| Q |
218 |
ttgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaaaatcacttatgccgctccagcg |
317 |
Q |
| |
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| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||| | || || |||||| | |
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| T |
39929245 |
tagtcttaatatcagcacccattttcctcacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagctgctccatca |
39929146 |
T |
|
| Q |
318 |
aatatgagcaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
| |
|
|||| ||| |||||||||||| | ||||||||||||||| ||||||||| |
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| T |
39929145 |
aataggagtaggacatgtgttcaatgttcttggcatggtggtctctgct |
39929097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 38062122 - 38061778
Alignment:
| Q |
22 |
tcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaactccaa |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||||| | ||| ||||| |
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|
| T |
38062122 |
tcatcatggagactatgcacagttcaacaagtggaagatttcaaaaaaataattggaatattaccactatggacttcaagtctattcctttcaattccaa |
38062023 |
T |
|
| Q |
122 |
tagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcccagctagttctgttgctgttatt-- |
219 |
Q |
| |
|
||| || | | | | | | |||||||||| |||| |||||||||| ||| ||||| | |||||||||||||||||| |||||||| |||||||| |
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|
| T |
38062022 |
tagtaaccgagaatttcttcattgtacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattat |
38061923 |
T |
|
| Q |
220 |
-gtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaaaatca-cttatgccgctccagcg |
317 |
Q |
| |
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|| ||||||||| || | ||||| ||||| ||||||||||| ||| | |||||| ||||| ||| ||| |||| |||| | | |||||||||||| || |
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| T |
38061922 |
agtgttaatatcaacatctattttcctcacctttcttgacagagtgttattgccaggttggaatacgataaccgaaaaaaaagcctatgccgctccaacg |
38061823 |
T |
|
| Q |
318 |
aatatgagcaggacatgtgttgactgttcttggcatggttgtctc |
362 |
Q |
| |
|
|||| ||| ||| |||||||||| |||| || ||||||||||| |
|
|
| T |
38061822 |
aataggagtaggctatgtgttgaccattctgggtatggttgtctc |
38061778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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