View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_low_4 (Length: 758)

Name: NF11651_low_4
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_low_4
NF11651_low_4
[»] chr3 (23 HSPs)
chr3 (18-446)||(3592746-3593195)
chr3 (516-740)||(3593265-3593489)
chr3 (516-738)||(18534120-18534337)
chr3 (516-738)||(3290821-3291038)
chr3 (628-726)||(30993012-30993108)
chr3 (256-326)||(24177968-24178038)
chr3 (330-450)||(15777308-15777425)
chr3 (516-574)||(18705368-18705426)
chr3 (516-722)||(39727465-39727658)
chr3 (516-715)||(9733334-9733527)
chr3 (601-738)||(12154701-12154837)
chr3 (657-738)||(12150617-12150697)
chr3 (261-298)||(32657336-32657373)
chr3 (672-738)||(3483955-3484021)
chr3 (372-449)||(6460042-6460118)
chr3 (516-567)||(15777215-15777265)
chr3 (372-450)||(9733591-9733668)
chr3 (673-738)||(10341438-10341501)
chr3 (672-738)||(15777058-15777124)
chr3 (330-399)||(18534437-18534506)
chr3 (657-735)||(18705220-18705298)
chr3 (330-399)||(30993253-30993323)
chr3 (265-298)||(32658589-32658622)
[»] chr8 (10 HSPs)
chr8 (516-738)||(42147609-42147827)
chr8 (516-738)||(40391564-40391781)
chr8 (330-450)||(17290631-17290751)
chr8 (657-738)||(17290913-17290994)
chr8 (255-326)||(42147375-42147446)
chr8 (672-738)||(6465969-6466035)
chr8 (672-738)||(9883981-9884047)
chr8 (516-574)||(17290819-17290877)
chr8 (516-573)||(9883813-9883870)
chr8 (525-574)||(15113413-15113462)
[»] chr6 (16 HSPs)
chr6 (580-738)||(9548970-9549128)
chr6 (516-738)||(19566573-19566791)
chr6 (579-738)||(13566378-13566536)
chr6 (603-738)||(13575483-13575618)
chr6 (603-738)||(13578022-13578157)
chr6 (516-737)||(19893060-19893276)
chr6 (579-738)||(13570925-13571083)
chr6 (516-738)||(19768747-19768957)
chr6 (330-450)||(9548761-9548880)
chr6 (551-725)||(19564941-19565110)
chr6 (658-738)||(12980180-12980260)
chr6 (516-596)||(12980339-12980414)
chr6 (330-399)||(19769046-19769117)
chr6 (516-563)||(9548951-9548998)
chr6 (601-715)||(15285685-15285799)
chr6 (658-699)||(14993804-14993845)
[»] chr5 (9 HSPs)
chr5 (516-738)||(21143619-21143835)
chr5 (601-738)||(32951762-32951898)
chr5 (651-725)||(39176711-39176785)
chr5 (623-738)||(32039884-32039999)
chr5 (330-450)||(39435924-39436043)
chr5 (657-738)||(26758380-26758460)
chr5 (330-400)||(39176448-39176520)
chr5 (672-727)||(26658884-26658939)
chr5 (672-727)||(26930473-26930528)
[»] chr2 (10 HSPs)
chr2 (516-738)||(20263394-20263607)
chr2 (516-738)||(32623287-32623504)
chr2 (516-735)||(16093714-16093928)
chr2 (579-738)||(27386641-27386800)
chr2 (330-450)||(16093532-16093651)
chr2 (352-446)||(27386908-27387002)
chr2 (354-450)||(32623568-32623664)
chr2 (260-303)||(16093423-16093466)
chr2 (265-326)||(20180863-20180923)
chr2 (370-450)||(20263671-20263751)
[»] chr7 (16 HSPs)
chr7 (516-738)||(18147320-18147530)
chr7 (516-734)||(33721432-33721639)
chr7 (580-736)||(34707315-34707473)
chr7 (516-737)||(11508397-11508613)
chr7 (516-737)||(32945499-32945715)
chr7 (575-734)||(3311162-3311321)
chr7 (657-737)||(11799784-11799864)
chr7 (523-734)||(3312834-3313041)
chr7 (330-441)||(32945355-32945463)
chr7 (264-399)||(3310877-3311014)
chr7 (334-399)||(3312651-3312715)
chr7 (664-723)||(11315763-11315822)
chr7 (260-326)||(21859820-21859885)
chr7 (330-450)||(18147571-18147691)
chr7 (342-389)||(13695873-13695920)
chr7 (332-389)||(13696071-13696128)
[»] chr4 (20 HSPs)
chr4 (523-723)||(13883992-13884187)
chr4 (580-738)||(18873787-18873944)
chr4 (516-738)||(14645942-14646159)
chr4 (330-450)||(23974129-23974249)
chr4 (335-450)||(19611888-19612003)
chr4 (517-727)||(11153979-11154177)
chr4 (659-737)||(19611591-19611669)
chr4 (334-450)||(25126202-25126318)
chr4 (335-449)||(15706694-15706808)
chr4 (653-736)||(21415009-21415092)
chr4 (657-738)||(15706954-15707035)
chr4 (516-596)||(19611749-19611824)
chr4 (623-738)||(23974432-23974547)
chr4 (519-597)||(25126063-25126135)
chr4 (518-574)||(15706862-15706918)
chr4 (330-399)||(11153820-11153890)
chr4 (335-383)||(14645763-14645810)
chr4 (265-333)||(18552412-18552479)
chr4 (518-596)||(23974315-23974388)
chr4 (692-738)||(25125956-25126002)
[»] chr1 (15 HSPs)
chr1 (658-738)||(21499016-21499096)
chr1 (516-738)||(12786428-12786645)
chr1 (575-738)||(52274557-52274720)
chr1 (516-738)||(18513506-18513722)
chr1 (330-450)||(12786243-12786364)
chr1 (516-573)||(9131527-9131584)
chr1 (330-450)||(18513786-18513906)
chr1 (670-738)||(91928-91996)
chr1 (337-399)||(23632181-23632244)
chr1 (672-738)||(9131373-9131439)
chr1 (325-450)||(9131648-9131772)
chr1 (580-738)||(12483983-12484142)
chr1 (623-738)||(23631896-23632012)
chr1 (516-563)||(12484114-12484161)
chr1 (264-298)||(18513958-18513992)
[»] scaffold0005 (2 HSPs)
scaffold0005 (516-738)||(171131-171348)
scaffold0005 (335-383)||(171480-171527)
[»] scaffold0019 (2 HSPs)
scaffold0019 (575-734)||(183149-183311)
scaffold0019 (346-450)||(182966-183070)
[»] scaffold0281 (3 HSPs)
scaffold0281 (337-399)||(1859-1921)
scaffold0281 (623-738)||(2113-2228)
scaffold0281 (516-573)||(1994-2051)
[»] scaffold0088 (2 HSPs)
scaffold0088 (335-450)||(35456-35571)
scaffold0088 (623-738)||(35214-35330)
[»] scaffold0094 (1 HSPs)
scaffold0094 (330-389)||(48262-48321)
[»] scaffold0978 (2 HSPs)
scaffold0978 (657-738)||(3089-3170)
scaffold0978 (516-574)||(2995-3053)
[»] scaffold0323 (1 HSPs)
scaffold0323 (657-738)||(16589-16670)
[»] scaffold0394 (1 HSPs)
scaffold0394 (673-738)||(7183-7247)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 3592746 - 3593195
Alignment:
Q  18 aataattcgtttcacaattaaaatttaggaaaaaggggcagcacaagtaattgtattagaatcaaaaatacatgtagcagcaatatgaattacggtggcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3592746 aataattcgtttcacaattaaaatttaggaaaaaggggcagcacaagtaattgtattagaatcaaaaatacatgtagcagcaatatgaattacggtggcc 3592845  T
Q  118 atgtaaattttaaaggaatataatataaaaatgggtttaaaagcaaaataggcagcaaagcaacttaaatgtaaaagcaaatttagactgaattcgaaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  3592846 atgtaaattttaaaggaatataatataaaaatgggtttaaaagcaaaataggcagcaaagcaacttaactgtaaaagcaaattttgactgaattcgaaag 3592945  T
Q  218 tgcat----aggttttcgaaaatatataattgcagcataagaaa-ggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacac 312  Q
    |||||    ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3592946 tgcataaaaaggttttcgaaaatatataattgcagcaacagaaagggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacat 3593045  T
Q  313 aaactcttcactacacg-----------------tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatc 395  Q
    |||| || |||||||||                 |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||    
T  3593046 aaaccctgcactacacgtatgatcatacaacccttatgatgaatagagactctccccttacctctagtttgccgaattgatgatttcctacggagaaatc 3593145  T
Q  396 tctccatagatttattctcgctattcctccttgcctcttctctccacaacc 446  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3593146 tctccatag-gttattctcgctattcctccttgcctcttctctccacaacc 3593195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 516 - 740
Target Start/End: Original strand, 3593265 - 3593489
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593265 atttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 3593364  T
Q  616 ctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacac 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593365 ctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacac 3593464  T
Q  716 atcttttctacctaattttactagt 740  Q
    |||||||||||||||||||| ||||    
T  3593465 atcttttctacctaattttattagt 3593489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 18534337 - 18534120
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||  ||||||| ||||| ||| |||||||||||||||||||||| |||||||   ||  |||||| ||||| ||||  || ||||||| |||||    
T  18534337 atttataaattctaattaagtttgttagcaatctttttaaattactatatttcctcta---ta--tttgttgctaatattttc-agattactatctgtac 18534244  T
Q  616 ctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
     ||||| ||||| || |||||||||| ||||||||| | ||||||||||  || ||  |||||||||||||| |||||||||||||| ||||||  ||      
T  18534243 gtctaagttttgttattattcttcctgtaactacattatctagctattcttacctccatctgcttaaatcattaaaacactactcagatcactagttatg 18534144  T
Q  715 catcttttctacctaattttacta 738  Q
    ||||||||||||| ||||||||||    
T  18534143 catcttttctacccaattttacta 18534120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 516 - 738
Target Start/End: Original strand, 3290821 - 3291038
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||| |     |||||| |||||||||||| |||| |  ||||||| || ||    
T  3290821 atttataagctctagttgagtttgttaccaatctttttaaattactatatgttc-----tctaggcttgttactaatc-ttttcaaattactatatgcac 3290914  T
Q  616 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||  | |||| || |||  ||  | ||||||||    || |||||||||||  ||||||  ||||||||| |||||||| |||| |||||||||||||    
T  3290915 ctctcgaatttgttattatcatttatgtaactacactgtcttgctattcacactcctctctatttaaatcattaaaacactgctcatctcactaactaca 3291014  T
Q  715 catcttttctacctaattttacta 738  Q
    | ||||||||||| ||||||||||    
T  3291015 cctcttttctacccaattttacta 3291038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 628 - 726
Target Start/End: Complemental strand, 30993108 - 30993012
Alignment:
Q  628 tactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctac 726  Q
    |||||||||| || |||||||| ||||| |||||||||||  |||| |||||||||||| ||||||||| |||||||| ||||||||| ||||||||||    
T  30993108 tactattctttctgtaactacaccaccttgctattcacac--ctctttgcttaaatcattaaaacactaatcagctcattaactacacctcttttctac 30993012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 24178038 - 24177968
Alignment:
Q  256 aaggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 326  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||    
T  24178038 aaggacacgaatataacatgaattcattaaaagatcatgaaaaacaatggaaaataaaaacccttcactac 24177968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 330 - 450
Target Start/End: Complemental strand, 15777425 - 15777308
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgc 429  Q
    ||||||||||| | |||||| |||||||||||||||||  || |||| | ||||||||||||||||||||  ||| ||  ||||||||||||||| ||||    
T  15777425 tatgatgaataaa-actccc-ccttacctctagtttgcaaaagtgataaattcctacggtgaaatctctctctaggttc-ttctcgctattcctctttgc 15777329  T
Q  430 ctcttctctccacaaccctag 450  Q
    || ||||||||| ||||||||    
T  15777328 ctattctctccataaccctag 15777308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 516 - 574
Target Start/End: Complemental strand, 18705426 - 18705368
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 574  Q
    |||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  18705426 atttataaactctaattgagtttgttaccaatatttttagattactatatgtcctctag 18705368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 516 - 722
Target Start/End: Complemental strand, 39727658 - 39727465
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||| |||||            ||||||||||  ||||||||  |  ||||||| || ||    
T  39727658 atttataagctctaattgagtttgttatcaatctttttagattattatat------------aggtttgttatcaatcttttcaaa-ttactatctgcac 39727572  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||| |||||| || ||||||| | | ||||||| | ||| |||||||||||  | |||| ||||||| || |||||||||||||||||||||||||||    
T  39727571 ctctatattttgttattattctttcgt-aactacaccgccttgctattcacactcccctctacttaaataattaaaacactactcagctcactaactaca 39727473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 715
Target Start/End: Complemental strand, 9733527 - 9733334
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    |||||||| |||||||||||| | ||||||||||||||| ||||||||||||||     || ||||||||||||||||  ||| |  ||||||| || ||    
T  9733527 atttataaactctaattgagtatgttaccaatctttttagattactatatgtcc-----tccaggtttgttactaatc--tttcaaattactatctgcac 9733435  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||| || ||| ||||||| || || || ||||| | ||| |||||||||||  |  ||| |||||||||| |||  |||||||  |||||||| ||||    
T  9733434 ctctatatattgttactattatttctgtagctacaccgccttgctattcacactcccatctacttaaatcattaaagtactactcgtctcactaattaca 9733335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 738
Target Start/End: Complemental strand, 12154837 - 12154701
Alignment:
Q  601 ggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactca 700  Q
    |||||||||| | ||||||| ||| | |||| |||||  | |||||||| |  || |||||||||||  | ||||||||||||||| ||||||||||||     
T  12154837 ggttactattcgcacctctattttggttactgttcttgttgtaactacaccgtcttgctattcacaccaccctctgcttaaatcattaaaacactactcc 12154738  T
Q  701 gctcactaactacacatcttttctacctaattttacta 738  Q
    | |||| |||||||||||||  ||||| ||||||||||    
T  12154737 gttcacaaactacacatcttccctacc-aattttacta 12154701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 657 - 738
Target Start/End: Complemental strand, 12150697 - 12150617
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||||| || ||||||||||||||| |||||||||||| | |||| |||||||| |||||  |||| ||||||||||    
T  12150697 gctattcacacctccctctgcttaaatcattaaaacactactccgttcacaaactacacctctttcatacc-aattttacta 12150617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 32657373 - 32657336
Alignment:
Q  261 cacaaatttaacatgaattcattaaaagatcatgaaaa 298  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32657373 cacaaatttaacatgaattcattaaaagatcatgaaaa 32657336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 672 - 738
Target Start/End: Original strand, 3483955 - 3484021
Alignment:
Q  672 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||| |||||||||| ||| || |||||| |||||||||||||||| ||||||| | ||||||||||    
T  3483955 ctctacttaaatcattaaagcattactcatctcactaactacacatattttctatccaattttacta 3484021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 6460042 - 6460118
Alignment:
Q  372 ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaacccta 449  Q
    |||||||  ||||||| |||||||||||  |||||   |||||| ||| |||||||||||||||||||||||||||||    
T  6460042 ttgatgaaatcctacgatgaaatctctctctagatcc-ttctcgttatgcctccttgcctcttctctccacaacccta 6460118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 567
Target Start/End: Complemental strand, 15777265 - 15777215
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgt 567  Q
    |||||||| |||||||||||||| |||||||||| |||| ||||||||||||    
T  15777265 atttataa-ctctaattgagtttgttaccaatctgtttagattactatatgt 15777215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 372 - 450
Target Start/End: Complemental strand, 9733668 - 9733591
Alignment:
Q  372 ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 450  Q
    ||||||| ||||||| ||||||||||||  ||||||  |||||| | | |||||||| ||||| |||||||||||||||    
T  9733668 ttgatgaattcctactgtgaaatctctctctagattc-ttctcggtgtgcctccttgactcttttctccacaaccctag 9733591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 738
Target Start/End: Original strand, 10341438 - 10341501
Alignment:
Q  673 tctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||| |||| ||||||||||||| ||||||||||  || ||||||||| | ||||||||||    
T  10341438 tctgcttaattcattaaaacactactcatctcactaact--acctcttttctatccaattttacta 10341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 672 - 738
Target Start/End: Complemental strand, 15777124 - 15777058
Alignment:
Q  672 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||| |||||||||| |||  |||||||| ||  |||||||||| ||||||||||| ||||||||||    
T  15777124 ctctacttaaatcattaaagtactactcatcttgctaactacacctcttttctacccaattttacta 15777058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 18534506 - 18534437
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 399  Q
    |||| ||||||||||||||| |||||||||||||||  |||| |||||||||||||| |||  ||||||||    
T  18534506 tatggtgaatagagactccc-ccttacctctagttttgcgaaattgatgatttcctatggttgaatctctc 18534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 735
Target Start/End: Complemental strand, 18705298 - 18705220
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaatttta 735  Q
    |||||||||||  | ||||  ||||||||| ||| || |||||| |||||||||||||| ||||||||| | |||||||    
T  18705298 gctattcacactcccctctatttaaatcattaaagcattactcatctcactaactacacctcttttctatccaatttta 18705220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 30993323 - 30993253
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 399  Q
    |||| ||||||||||||||| ||||||||||||||||  ||| ||||||| ||| ||| ||||| ||||||    
T  30993323 tatggtgaatagagactccccccttacctctagtttggagaatttgatgaattcatacagtgaagtctctc 30993253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 32658589 - 32658622
Alignment:
Q  265 aatttaacatgaattcattaaaagatcatgaaaa 298  Q
    ||||||| ||||||||||||||||||||||||||    
T  32658589 aatttaaaatgaattcattaaaagatcatgaaaa 32658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 4e-68; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 516 - 738
Target Start/End: Original strand, 42147609 - 42147827
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||      ||||||||||||||||||| |||||||| |||||||    
T  42147609 atttataagttataattgagtttgttaccaatctttttagattactatatgtcctctat-----gtttgttactaatctttttcaggttactgtttgtac 42147703  T
Q  616 ctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    |||||| ||||| ||||||||||| | |||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||    
T  42147704 ctctaaattttgttactattcttcgtgtaactacaacacctagctattcacacctccctctgcttaaatcattaaaacactactcagctcactaactaca 42147803  T
Q  715 catcttttctacctaattttacta 738  Q
    ||||||||||| | ||||||||||    
T  42147804 catcttttctatcaaattttacta 42147827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 516 - 738
Target Start/End: Original strand, 40391564 - 40391781
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||     ||||||||| ||| ||||||  |||||||||| ||    
T  40391564 atttataagctctaattgagtttgttaccaatctttttatattactatatgtcctctagt-----tttgttacttatc-tttttaaattactatttgcac 40391657  T
Q  616 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||  | |||| ||||||| ||  | |||||||| |  || | |||||||||  | |||| |||||||||| |||  | |||||| |||||||||||||    
T  40391658 ctctcgaatttgttactattatttttgtaactacaccgtcttgttattcacactcccctctacttaaatcattaaagtattactcatctcactaactaca 40391757  T
Q  715 catcttttctacctaattttacta 738  Q
    | || |||| ||| ||||||||||    
T  40391758 cctcatttcaacccaattttacta 40391781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 17290631 - 17290751
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 428  Q
    |||| ||||||||||||||| ||||||||||| |||   ||| ||||| ||||| |||||| |||||||||  ||| ||  |||||| ||||||||||||    
T  17290631 tatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatctctctctaggttc-ttctcgttattcctccttg 17290729  T
Q  429 cctcttctctccacaaccctag 450  Q
     |||||||||||||||||||||    
T  17290730 tctcttctctccacaaccctag 17290751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 657 - 738
Target Start/End: Original strand, 17290913 - 17290994
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||| ||| || ||||||||||||||  ||| |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  17290913 gctattcgcacctccctctgcttaaatcaataaagcactactcagctcactaactacatctcttttctacccaattttacta 17290994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 42147375 - 42147446
Alignment:
Q  255 aaaggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 326  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |||  |||||||||    
T  42147375 aaaggacacgaatgtaacatgaattcattaaaagatcatgaaaaacaatgaaaaataaaaaaccttcactac 42147446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 672 - 738
Target Start/End: Original strand, 6465969 - 6466035
Alignment:
Q  672 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||||||||| |||||||| |||| || ||||| ||||| ||||||||||||||||||||||    
T  6465969 ctctgcttaaatcattaaaacacttctcatcttactaattacacctcttttctacctaattttacta 6466035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 672 - 738
Target Start/End: Original strand, 9883981 - 9884047
Alignment:
Q  672 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||||||||||| |  |||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  9883981 ctctgcttaaataactaaaacactactcagctcactaactacacctcttttctaaccaattttacta 9884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 516 - 574
Target Start/End: Original strand, 17290819 - 17290877
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 574  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||    
T  17290819 atttataagctctaattgagtttattacaaatatttttagattactatatgttctctag 17290877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 516 - 573
Target Start/End: Original strand, 9883813 - 9883870
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctcta 573  Q
    ||||||||| | ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  9883813 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcctcta 9883870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 574
Target Start/End: Original strand, 15113413 - 15113462
Alignment:
Q  525 ctctaattgagtttattaccaatctttttaaattactatatgtcctctag 574  Q
    |||||||||||||| |||||||||||||||  ||||||||| | ||||||    
T  15113413 ctctaattgagtttgttaccaatctttttagcttactatatattctctag 15113462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 580 - 738
Target Start/End: Original strand, 9548970 - 9549128
Alignment:
Q  580 gtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgct 678  Q
    ||||||||| ||| || ||||| |||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||||||||| || |||| ||    
T  9548970 gtttgttaccaat-ttctttagattactatttgtacctctagattttgttactattcttcttgtaactacatcacctagctattcacacctccctctcct 9549068  T
Q  679 taaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9549069 taaatcattaaaacactactcagctcactaactacacctcttttctacccaattttacta 9549128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 19566791 - 19566573
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    || |||||||||||| ||||  |  |||  ||||||||    
T  19566791 atttataatctctaattgagtttgttaccaatctttttagattactatatgtcctcta----agttttgttactaatattttcaaa-ttatcatttgtac 19566697  T
Q  616 ctctaatttt-gatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    |||||||||| | |||||||||||  ||||||||| |||||  |||||||||| || |||| |||||||||| |||||||||||||||| ||||||||||    
T  19566696 ctctaatttttgttactattcttctcttaactacaccacctttctattcacacctccctctacttaaatcattaaaacactactcagctgactaactaca 19566597  T
Q  715 catcttttctacctaattttacta 738  Q
    | |||||||||   ||||||||||    
T  19566596 cttcttttctattcaattttacta 19566573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 579 - 738
Target Start/End: Original strand, 13566378 - 13566536
Alignment:
Q  579 ggtttgttactaatcttttttaggttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgc 677  Q
    |||||||||| |||||||| ||  ||||||| ||||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||    
T  13566378 ggtttgttacaaatcttttctaa-ttactatctgtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgc 13566476  T
Q  678 ttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
     |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  13566477 gtaaatcat-aaaacactactcagctcactaactacacctcttttctaccaaattttacta 13566536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 603 - 738
Target Start/End: Original strand, 13575483 - 13575618
Alignment:
Q  603 ttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcag 701  Q
    |||||||  |||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  13575483 ttactatcagtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgcttaaatcat-aaaacactactcag 13575581  T
Q  702 ctcactaactacacatcttttctacctaattttacta 738  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  13575582 ctcactaactacacctcttttctaccaaattttacta 13575618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 603 - 738
Target Start/End: Original strand, 13578022 - 13578157
Alignment:
Q  603 ttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcag 701  Q
    |||||||  |||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  13578022 ttactatcagtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgcttaaatcat-aaaacactactcag 13578120  T
Q  702 ctcactaactacacatcttttctacctaattttacta 738  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  13578121 ctcactaactacacctcttttctaccaaattttacta 13578157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 516 - 737
Target Start/End: Original strand, 19893060 - 19893276
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||      |||||||||||||||||  || ||||||| || ||    
T  19893060 atttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctaga-----tttgttactaatcttttc-agattactatctgcac 19893153  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||| |||||||||||||| ||  | |||||||| |  |  |||||||||||  | |||| |||||||||| |||  |||||||| |||||||||||||    
T  19893154 ctctatattttgatactattatttatgtaactacaccgtcgtgctattcacactcccctctacttaaatcattaaagtactactcatctcactaactaca 19893253  T
Q  715 catcttttctacctaattttact 737  Q
    || ||||||| || |||||||||    
T  19893254 caacttttcttcccaattttact 19893276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 579 - 738
Target Start/End: Original strand, 13570925 - 13571083
Alignment:
Q  579 ggtttgttactaatcttttttaggttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgc 677  Q
    |||||||||| |||||||| ||  ||||||| ||||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||    
T  13570925 ggtttgttacaaatcttttctaa-ttactatctgtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgc 13571023  T
Q  678 ttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||| |||||| |||||| |||||||||||||| |||||||| || ||||||||||    
T  13571024 ttaaatcat-aaaacattactcatctcactaactacacctcttttcttccaaattttacta 13571083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 19768957 - 19768747
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||            ||||||||||| ||| ||||| || ||||||| || ||    
T  19768957 atttataagctctaattgagtttgttaccaatctttttagattactatat------------aggtttgttaccaatgttttt-agattactatctgcac 19768871  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||| |||||| ||||||||||    ||||| || |  || |||||||||||  | |||| ||||||| || |||||||||||||||||||||||||||    
T  19768870 ctctatattttgttactattcttttagtaactgcaccgacttgctattcacactcccctctacttaaataattaaaacactactcagctcactaactaca 19768771  T
Q  715 catcttttctacctaattttacta 738  Q
    | ||||||||| | ||||||||||    
T  19768770 cctcttttctatccaattttacta 19768747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 9548761 - 9548880
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagttt--gccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 427  Q
    ||||||||| |||||||||| ||||| |||||||||  ||  ||||||||||||||||||||||||||||||  ||  ||| |||||||||| |||||||    
T  9548761 tatgatgaacagagactccccccttatctctagtttttgcgaaattgatgatttcctacggtgaaatctctc--tacgttt-ttctcgctatgcctcctt 9548857  T
Q  428 gcctcttctctccacaaccctag 450  Q
    | |||||||||||||||||||||    
T  9548858 gtctcttctctccacaaccctag 9548880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 551 - 725
Target Start/End: Complemental strand, 19565110 - 19564941
Alignment:
Q  551 tttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacctctaa-ttttgatactattcttcctttaactaca 649  Q
    |||| |||||||||||||||     |||||||||||||||||| |||| || ||||||||||||||||||| ||||| ||| |||||||   ||||||||    
T  19565110 tttagattactatatgtcct-----ctaggtttgttactaatc-ttttcagattactatttgtacctctaatttttgttaccattcttctcctaactaca 19565017  T
Q  650 tcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttcta 725  Q
     |||||  |||||||||| || |||| |||||||||| ||||   ||||||| |||||| |||||| |||||||||    
T  19565016 ccacctttctattcacacctccctctacttaaatcattaaaatgatactcaggtcactagctacacttcttttcta 19564941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 658 - 738
Target Start/End: Complemental strand, 12980260 - 12980180
Alignment:
Q  658 ctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||||  | ||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| | ||||||||||    
T  12980260 ctattcacactcccctctgcttaaatcattaaagcactactcatctcactaactacacctcttttctatccaattttacta 12980180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 596
Target Start/End: Complemental strand, 12980414 - 12980339
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttt 596  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||     |||||||||||||||||||||||    
T  12980414 atttataagctctaattgagtttgttatcaatctttttagatttctatatgtc-----gtctaggtttgttactaatcttt 12980339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 19769117 - 19769046
Alignment:
Q  330 tatgatgaatagagactccctcc-ttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctc 399  Q
    |||||||||||||||||||| || |||||||||||| |  ||||| ||||| ||||||||||||||||||||    
T  19769117 tatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctc 19769046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 563
Target Start/End: Original strand, 9548951 - 9548998
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactat 563  Q
    ||||||||||||||||||||||| |||||||| | |||| ||||||||    
T  9548951 atttataagctctaattgagtttgttaccaatttctttagattactat 9548998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 601 - 715
Target Start/End: Complemental strand, 15285799 - 15285685
Alignment:
Q  601 ggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactca 700  Q
    ||||||||| || ||||||| ||| | |||||||||   | ||||||||   ||| ||||||||||| ||  |||| |||| |||| ||||||||| ||     
T  15285799 ggttactatctgcacctctattttcgttactattctcgttgtaactacactgccttgctattcacacctccttctgattaagtcattaaaacactaatcg 15285700  T
Q  701 gctcactaactacac 715  Q
    |||||||||||||||    
T  15285699 gctcactaactacac 15285685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 699
Target Start/End: Original strand, 14993804 - 14993845
Alignment:
Q  658 ctattcacacatctctctgcttaaatcatcaaaacactactc 699  Q
    |||||||||| || ||||||||||||||| ||||||||||||    
T  14993804 ctattcacacctccctctgcttaaatcattaaaacactactc 14993845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 21143835 - 21143619
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||     ||||||||||||| ||||  ||  ||||||||||||    
T  21143835 atttataagctctaattgagtttgttaccaatcttttcagattactatatgtcctctag-----gtttgttactaatattttc-agaatactatttgtac 21143742  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
     |||| |||||| || |||||||  | |||||| | ||||| |||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||    
T  21143741 atctagattttgttaatattctttttgtaactataccaccttgctattcacacatcactctgcttaaatcattaaaacaatactcagttcactaactaca 21143642  T
Q  715 catcttttctacctaattttacta 738  Q
    | | ||||||||||||||||||||    
T  21143641 cct-ttttctacctaattttacta 21143619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 601 - 738
Target Start/End: Original strand, 32951762 - 32951898
Alignment:
Q  601 ggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactca 700  Q
    |||||||||||| ||||||| ||| | ||||||||||  | ||||| |  | ||| |||||||||||||| ||||| ||||||||| |||||||||||||    
T  32951762 ggttactatttgcacctctattttggttactattcttgttgtaacttctccgccttgctattcacacatccctctgtttaaatcattaaaacactactca 32951861  T
Q  701 gctcactaactacacatcttttctacctaattttacta 738  Q
     |||||| ||||||| |||||||| || ||||||||||    
T  32951862 tctcact-actacacctcttttcttcccaattttacta 32951898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 651 - 725
Target Start/End: Original strand, 39176711 - 39176785
Alignment:
Q  651 cacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttcta 725  Q
    ||||||||||||||||| || ||| ||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  39176711 cacctagctattcacacctccctccgcttaaatcattaaaacactacccaactcactaactacacatcttttcta 39176785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 623 - 738
Target Start/End: Original strand, 32039884 - 32039999
Alignment:
Q  623 tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatctttt 722  Q
    |||| ||||||| || || |||||||| |  || |||||||||||  | |||| |||||||||| ||| ||||||||| ||  |||||||||||||||||    
T  32039884 tttgttactattatttctataactacaccgtcttgctattcacactcccctctacttaaatcattaaagcactactcatcttgctaactacacatctttt 32039983  T
Q  723 ctacctaattttacta 738  Q
    ||||| ||||||||||    
T  32039984 ctacccaattttacta 32039999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 450
Target Start/End: Complemental strand, 39436043 - 39435924
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 428  Q
    |||| ||||||||||||||| |||||||||||||||   ||| ||||||||||||||||||||||||||||  |||| || ||||  |||| ||| ||||    
T  39436043 tatggtgaatagagactccc-ccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctctttaga-ttcttcttactatgccttcttg 39435946  T
Q  429 cctcttctctccacaaccctag 450  Q
    | ||||||||||| || |||||    
T  39435945 catcttctctccaaaatcctag 39435924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 738
Target Start/End: Complemental strand, 26758460 - 26758380
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||||||||||  | ||||||||||||||| |||||||||||  | |||| |||||||| ||||| ||||| ||||||||||    
T  26758460 gctattcacacccccctctgcttaaatcattaaaacactacttcgttcacaaactacacctctttcctacc-aattttacta 26758380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 39176448 - 39176520
Alignment:
Q  330 tatgatgaatagagactccctcc-ttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctcc 400  Q
    ||||||||||||||||| || || |||||||||||||  |||| |||||||||| ||| ||||||||||||||    
T  39176448 tatgatgaatagagacttcccccattacctctagttttgcgaaattgatgattttctatggtgaaatctctcc 39176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 727
Target Start/End: Original strand, 26658884 - 26658939
Alignment:
Q  672 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacc 727  Q
    |||| |||||||||| ||| ||||||||| |||||| ||||||| |||||||||||    
T  26658884 ctctacttaaatcattaaagcactactcatctcacttactacacctcttttctacc 26658939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 727
Target Start/End: Original strand, 26930473 - 26930528
Alignment:
Q  672 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacc 727  Q
    |||| |||||||||| ||| ||||||||| |||||| ||||||| |||||||||||    
T  26930473 ctctacttaaatcattaaagcactactcatctcacttactacacctcttttctacc 26930528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 20263607 - 20263394
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    |||||| |||||||||||||||| |||||||||||| || ||||||    ||||| |||     ||||||||||||||||||  |  |||||||||||||    
T  20263607 atttattagctctaattgagtttgttaccaatctttatagattact----gtcctttag-----gtttgttactaatcttttcaaa-ttactatttgtac 20263518  T
Q  616 ctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    |||||| ||||| |  ||| |||| | |||||||||||||||||||||||||| || |||||||||| |||| |||||||| ||||||||||||||||||    
T  20263517 ctctaaattttgtttatatacttcttctaactacatcacctagctattcacacctccctctgcttaagtcattaaaacacttctcagctcactaactaca 20263418  T
Q  715 catcttttctacctaattttacta 738  Q
    | ||||||||||| ||||||||||    
T  20263417 cctcttttctacccaattttacta 20263394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 32623504 - 32623287
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||| ||||||| ||||| | || |||||||||| ||||||||||||| |||||     ||||||||||||||||||  |  ||| ||| || ||    
T  32623504 atttataaggtctaattaagtttgtcactaatctttttagattactatatgtcatctag-----gtttgttactaatcttttcaaa-ttattatctgcac 32623411  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||  | |||| ||||||| || || || ||||| |  ||  ||||||||||  | |||| |||||||||| ||| ||||||||| |||||||||||||    
T  32623410 ctcttgaatttgttactattatttctgtagctacaccgtcttactattcacactcccctctacttaaatcattaaagcactactcatctcactaactaca 32623311  T
Q  715 catcttttctacctaattttacta 738  Q
    | ||||||||||||||| ||||||    
T  32623310 cctcttttctacctaatgttacta 32623287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 735
Target Start/End: Original strand, 16093714 - 16093928
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||     |||| |||| |||||||| ||||| |  ||||||| || ||    
T  16093714 atttataaactctaattgagtttgttacctatctttttaaattactatatgtcc-----tctaagttttttactaat-tttttcaaattactatctgcac 16093807  T
Q  616 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||  | |||| ||||||| || || ||| || | |  || |||||||||||  | |||| ||||| |||| ||| ||||||||| |||| ||||||||    
T  16093808 ctctcgaatttgttactattatttctgtaattataccgtcttgctattcacactcccctctacttaactcattaaagcactactcatctcattaactaca 16093907  T
Q  715 catcttttctacctaatttta 735  Q
    | ||| ||||||| |||||||    
T  16093908 cctctattctacccaatttta 16093928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 738
Target Start/End: Complemental strand, 27386800 - 27386641
Alignment:
Q  579 ggtttgttactaatcttttttaggttactatttgtacctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgc 677  Q
    |||||||||||||||||||  |  ||||||| || |||||| || |||| ||||||| || || ||||||||||  || |||||||||||  | | || |    
T  27386800 ggtttgttactaatcttttcaaa-ttactatctgcacctctcaaatttgttactattatttctgtaactacatcgtcttgctattcacactccccactac 27386702  T
Q  678 ttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||||| || ||| ||||||||| |||||||||||||| || |||||||| ||||||||||    
T  27386701 ttaaattattaaagcactactcatctcactaactacacctcatttctaccaaattttacta 27386641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 16093532 - 16093651
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgc 429  Q
    |||| |||||||||||||||  ||||||||||||||||  || |||||| || |||| ||||||||||||  |||  ||  ||||||||||| || ||||    
T  16093532 tatggtgaatagagactcccctcttacctctagtttgcaaaagtgatgaatttctacagtgaaatctctctctag-gttcctctcgctattcatctttgc 16093630  T
Q  430 ctcttctctccacaaccctag 450  Q
    || ||||||||| ||||||||    
T  16093631 cttttctctccataaccctag 16093651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 352 - 446
Target Start/End: Complemental strand, 27387002 - 27386908
Alignment:
Q  352 cttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaacc 446  Q
    ||||||||||||||  |||| || ||||||| |||||||||||||||||  ||| ||  ||||||| || ||||||||||||||||||||||||||    
T  27387002 cttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttc-ttctcgccatgcctccttgcctcttctctccacaacc 27386908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 354 - 450
Target Start/End: Complemental strand, 32623664 - 32623568
Alignment:
Q  354 tacctctagttt-gccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 450  Q
    |||||||||||| ||  |||||||||||| |||||||||||||||||  |||| || |||||| |||||||| ||||||||||  |||| ||||||||    
T  32623664 tacctctagttttgcaaaattgatgattttctacggtgaaatctctctctaga-ttcttctcgttattcctctttgcctcttcattccataaccctag 32623568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 16093423 - 16093466
Alignment:
Q  260 acacaaatttaacatgaattcattaaaagatcatgaaaaacaat 303  Q
    |||| |||||||||||  ||||||||||||||||||||||||||    
T  16093423 acacgaatttaacatggtttcattaaaagatcatgaaaaacaat 16093466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 20180863 - 20180923
Alignment:
Q  265 aatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 326  Q
    ||||||||||||||||||||||| |||||||||  ||||  |||||| || |||||||||||    
T  20180863 aatttaacatgaattcattaaaa-atcatgaaacccaatagaaaacaaaagctcttcactac 20180923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 20263751 - 20263671
Alignment:
Q  370 aattgatgatttcctacggt-gaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 450  Q
    ||||||||| |||||||||| ||||||||||  ||||||  |||||| | | |||||||| ||||| |||||||||||||||    
T  20263751 aattgatgaattcctacggtagaaatctctctttagattc-ttctcggtgtgcctccttgactcttttctccacaaccctag 20263671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 9e-32; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 18147530 - 18147320
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||            ||||||||||| ||||||||  || ||||||| || ||    
T  18147530 atttataagctctaattgagtttgttaccaatctttttagattactatat------------aggtttgttaccaatcttttc-agattactatctgcac 18147444  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||| |||||| |||||||||| |  |||||||| |  || |||||||||||  | |||| ||||||| || |||||||||||||||||||| ||||||    
T  18147443 ctctatattttgttactattctttcagtaactacaccgacttgctattcacactcccctctacttaaataattaaaacactactcagctcactcactaca 18147344  T
Q  715 catcttttctacctaattttacta 738  Q
    ||||||||||| | ||||||||||    
T  18147343 catcttttctatccaattttacta 18147320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 516 - 734
Target Start/End: Original strand, 33721432 - 33721639
Alignment:
Q  516 atttataagctctaattga-gtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgta 614  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||| |||     | | || ||||||||||||||||||  || ||| ||||||||    
T  33721432 atttataagctctaatttaagtttattaccaatctttttagattactatgtgt-----attataagtttgttactaatcttttg-agattattatttgta 33721525  T
Q  615 cctctaat-tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactac 713  Q
    |||||||  |||| ||||||        |||||||||||||||||||||||||  ||  ||| |||||||||| |||||||||||||||| |||||||||    
T  33721526 cctctaaaatttgttactatg-------taactacatcacctagctattcacatctccttctacttaaatcattaaaacactactcagcttactaactac 33721618  T
Q  714 acatcttttctacctaatttt 734  Q
    |||||||||||||| ||||||    
T  33721619 acatcttttctacccaatttt 33721639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 580 - 736
Target Start/End: Original strand, 34707315 - 34707473
Alignment:
Q  580 gtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctt-taactacatcacctagc-tattcacacatctctctg 676  Q
    ||||||||||||||||||  ||||||||||||||||||||| || ||| ||||||| ||  || |||||||| ||||| || || |||||| | ||||||    
T  34707315 gtttgttactaatcttttc-aggttactatttgtacctctagatcttgttactatttttttttataactacaccaccttgcgtactcacacctttctctg 34707413  T
Q  677 cttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttac 736  Q
    |||||||||| ||||||||||| |||||||||||||||| ||||||||||  ||||||||    
T  34707414 cttaaatcattaaaacactactgagctcactaactacacttcttttctacaaaattttac 34707473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 516 - 737
Target Start/End: Complemental strand, 11508613 - 11508397
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||     || |||||||||||||||| |||| || ||||||| || ||    
T  11508613 atttataagctctaattgagtttgttaccaatttttttagattactatatgtcc-----tccaggtttgttactaatc-ttttcagattactatctgcac 11508520  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||| || ||| ||||||| || || || ||||| | ||| |||||||||||  |  ||| |||||||||| |||  |||||||  |||||||||||||    
T  11508519 ctctatatattgttactattatttctgtagctacaccgccttgctattcacactcccatctacttaaatcattaaagtactactcgtctcactaactaca 11508420  T
Q  715 catcttttctacctaattttact 737  Q
    | |||||||  || |||||||||    
T  11508419 cctcttttcatcccaattttact 11508397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 516 - 737
Target Start/End: Original strand, 32945499 - 32945715
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||| |||| |||||| ||| |||||||||||  ||| ||||||||||||||      |||||||||||||||||  |  |||||||||| ||    
T  32945499 atttataagctttaatagagtttgttatcaatctttttatgttaatatatgtcctctaga-----tttgttactaatcttttc-atattactatttgcac 32945592  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||| |||||| ||||||| || || ||||||||    || |||||||||||  | |||| |||||||||| |||  |||||||| |||||||||||||    
T  32945593 ctctatattttgttactattatttctgtaactacactgtcttgctattcacactcccctctacttaaatcattaaagtactactcatctcactaactaca 32945692  T
Q  715 catcttttctacctaattttact 737  Q
    | |||||||| || |||||||||    
T  32945693 cctcttttcttcccaattttact 32945715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 575 - 734
Target Start/End: Original strand, 3311162 - 3311321
Alignment:
Q  575 tctaggtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctct 673  Q
    ||||||||||||||||||| |||  |  ||||||||||||| |||| |||||| |||||||||| || |||||||||||| | ||||||||||| ||  |    
T  3311162 tctaggtttgttactaatcatttcaaa-ttactatttgtacttctagattttgctactattctttctgtaactacatcactttgctattcacacctcctt 3311260  T
Q  674 ctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaatttt 734  Q
    ||||||||||||| |||| |||| ||| || |||||||| || | ||||||||| ||||||    
T  3311261 ctgcttaaatcattaaaatactattcatctaactaactataccttttttctacccaatttt 3311321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 657 - 737
Target Start/End: Complemental strand, 11799864 - 11799784
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttact 737  Q
    ||||||||||| |||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||| |||||||||    
T  11799864 gctattcacacctctctctgcttaaatcattaaaacaatactcatctcactaactacacctcttttctacccaattttact 11799784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 523 - 734
Target Start/End: Original strand, 3312834 - 3313041
Alignment:
Q  523 agctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacctcta-a 621  Q
    ||||||| |||||||| |||| |||||||||| |||||||| | | |     |||| |||||||||||||| |||  |  ||||||||||||| |||| |    
T  3312834 agctctatttgagtttgttactaatctttttagattactatgtttacc----tctatgtttgttactaatcatttcaaa-ttactatttgtacttctaga 3312928  T
Q  622 ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 721  Q
    ||||| |||||||||| || |||||||||||  | ||||||||||| ||  |||| ||||||||| |||| |||| ||||||||| ||||| || | |||    
T  3312929 ttttgctactattctttctgtaactacatcaatttgctattcacacctccttctgattaaatcattaaaatactattcagctcacgaactataccttttt 3313028  T
Q  722 tctacctaatttt 734  Q
    |||| | ||||||    
T  3313029 tctatccaatttt 3313041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 330 - 441
Target Start/End: Original strand, 32945355 - 32945463
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 428  Q
    ||||||||||| | |||||| |||||||||||||||  |||| |||||||||||||||| ||||||||||| |   | || |||| |||||||||| |||    
T  32945355 tatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctcta---agttcttctggctattcctctttg 32945450  T
Q  429 cctcttctctcca 441  Q
    |||||||||||||    
T  32945451 cctcttctctcca 32945463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 399
Target Start/End: Original strand, 3310877 - 3311014
Alignment:
Q  264 aaatttaacatgaattcattaaaagatcatgaaaaaca--atgtaaaacacaaactcttca--ctacacgtatgatgaatagagactccctccttacctc 359  Q
    ||||||||||| |||||||||||||||| ||||||  |  | | ||||||||||| |||||  | || | ||| |||||||||||||||| |||||||||    
T  3310877 aaatttaacataaattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcatacaacccttat-atgaatagagactccc-ccttacctc 3310974  T
Q  360 tagtttgccgaattgatgatttcctacggtgaaatctctc 399  Q
    ||||||| ||||||||||| ||||||| ||  ||||||||    
T  3310975 tagtttgtcgaattgatgacttcctactgttgaatctctc 3311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 3312651 - 3312715
Alignment:
Q  334 atgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctc 399  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||  ||||||||    
T  3312651 atgaatagagactccc-ccttatctctagtttgccgaattgatgacttcctacggttgaatctctc 3312715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 723
Target Start/End: Original strand, 11315763 - 11315822
Alignment:
Q  664 acacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttc 723  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||||||||  |||||||    
T  11315763 acacatccctctacttaaatcattaaaacactactcagctcactaactacatttcttttc 11315822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 21859885 - 21859820
Alignment:
Q  260 acacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 326  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||  ||||| ||||||||||||||    
T  21859885 acacaaatttaacacaaattcattaaaaaatcatgaaaaacaatg-gaaacaaaaactcttcactac 21859820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 330 - 450
Target Start/End: Complemental strand, 18147691 - 18147571
Alignment:
Q  330 tatgatgaatagagactccctcc-ttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 427  Q
    |||||||||||||||||||| || |||||||||||| |  ||| ||||||| ||||||||| ||||||||||  |||| || |||||| | | ||| |||    
T  18147691 tatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctctctaga-ttcttctcggtgtgcct-ctt 18147594  T
Q  428 gcctcttctctccacaaccctag 450  Q
    | ||||| |||||||||||||||    
T  18147593 gactcttttctccacaaccctag 18147571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 389
Target Start/End: Original strand, 13695873 - 13695920
Alignment:
Q  342 agactccctccttacctctagtttgccgaattgatgatttcctacggt 389  Q
    |||||| | |||||||||||||||||||||||||||| || |||||||    
T  13695873 agactctccccttacctctagtttgccgaattgatgaatttctacggt 13695920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 13696071 - 13696128
Alignment:
Q  332 tgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggt 389  Q
    ||||||| | |||||| | |||| ||||||||||||||||||||||| || |||||||    
T  13696071 tgatgaagatagactctccccttccctctagtttgccgaattgatgaatttctacggt 13696128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 523 - 723
Target Start/End: Complemental strand, 13884187 - 13883992
Alignment:
Q  523 agctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacctctaat 622  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||||     |||| |||  ||||||||  || ||||||||||||||||||||    
T  13884187 agctctaattgagtttgttaccaaactttttagattactatatgtcctctag-----gtttattaacaatcttttc-agattactatttgtacctctaat 13884094  T
Q  623 ttt-gatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 721  Q
    ||| | |||||||||||   |||||||| |||||  || ||||||| |  |||| |||||||||| |||||||||||||| ||||||||||||  |||||    
T  13884093 ttttgttactattcttctcgtaactacaccacctttcttttcacaccttcctctacttaaatcattaaaacactactcagttcactaactacaattcttt 13883994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 580 - 738
Target Start/End: Original strand, 18873787 - 18873944
Alignment:
Q  580 gtttgttactaatcttttttaggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgctt 679  Q
    |||||||| |||||||||  || ||||||| ||||||||||| |||| ||||| |||| ||  | ||||| | |||  |||||| ||| || |||| |||    
T  18873787 gtttgttattaatcttttc-agattactatatgtacctctaagtttgttactaatctttctgcagctacaccgcctttctattctcacctccctctactt 18873885  T
Q  680 aaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18873886 aaatcattaaaacactactcagctcactaactacacctcttttctacctaattttacta 18873944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 516 - 738
Target Start/End: Original strand, 14645942 - 14646159
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    |||||||| |||||||||||||| |||||||| |||||| ||| |||||||| ||||||     ||||||||||||||||||  |  ||||||| || ||    
T  14645942 atttataatctctaattgagtttgttaccaatttttttagatttctatatgttctctag-----gtttgttactaatcttttcaaa-ttactatatgcac 14646035  T
Q  616 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    |||| || |||| ||||||| || || |||||| | |  || |||||||||||  |  ||| |||||||||| ||| ||||||||| |||||||||||||    
T  14646036 ctctcaaatttgttactattatttctgtaactataccgtcttgctattcacactcccatctacttaaatcattaaagcactactcatctcactaactaca 14646135  T
Q  715 catcttttctacctaattttacta 738  Q
    | ||||||||||| ||||||||||    
T  14646136 cctcttttctacccaattttacta 14646159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 23974129 - 23974249
Alignment:
Q  330 tatgatgaatagagactccctcc-ttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 428  Q
    ||||||||||| | |||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||  |||  || ||||||||||||||| |||    
T  23974129 tatgatgaataaaaactccccccattacctctagtttgcagaattgatgatttcctacggtgaaatctttctctag-gttcttctcgctattcctctttg 23974227  T
Q  429 cctcttctctccacaaccctag 450  Q
     |||||||||||| ||||||||    
T  23974228 tctcttctctccataaccctag 23974249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 450
Target Start/End: Complemental strand, 19612003 - 19611888
Alignment:
Q  335 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 433  Q
    ||||||||||||||| || |||||||| |||  |||| ||||||||| |||||| |||||||||||  ||| ||  |||||||||| |||||||||||||    
T  19612003 tgaatagagactccccccatacctctaattttgcgaaattgatgattccctacgatgaaatctctctctaggttc-ttctcgctatccctccttgcctct 19611905  T
Q  434 tctctccacaaccctag 450  Q
    |||| ||||||||||||    
T  19611904 tctccccacaaccctag 19611888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 727
Target Start/End: Original strand, 11153979 - 11154177
Alignment:
Q  517 tttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacc 616  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||            ||||||||||| ||||||||  || ||| ||| || |||    
T  11153979 tttataagctctaattgagtttgttaccaatctttttagattagtatat------------aggtttgttaccaatcttttc-agattattatctgcacc 11154065  T
Q  617 tcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacac 715  Q
    |||| |||||| || ||||||| |  ||| |||| | ||| |||||||||||  | |||| || |||| || ||||||||||||| ||||||||||||||    
T  11154066 tctatattttgttattattctttcagtaattacaccgccttgctattcacactcccctctactaaaataattaaaacactactcaactcactaactacac 11154165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 659 - 737
Target Start/End: Complemental strand, 19611669 - 19611591
Alignment:
Q  659 tattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttact 737  Q
    |||||||||  | ||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| |||||||||||    
T  19611669 tattcacactcccctctgcttaaatcattaaagcactactcatctcactaactacacctcttttctatctaattttact 19611591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 334 - 450
Target Start/End: Complemental strand, 25126318 - 25126202
Alignment:
Q  334 atgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctc 432  Q
    |||||||||||||||| || ||||||||||||  |||| |||||||||||||||| | |||| ||||  ||| ||  ||||||||||||||| |||||||    
T  25126318 atgaatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttc-ttctcgctattcctctttgcctc 25126220  T
Q  433 ttctctccacaaccctag 450  Q
    ||||| ||| ||||||||    
T  25126219 ttctcaccataaccctag 25126202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 15706694 - 15706808
Alignment:
Q  335 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 433  Q
    ||||||||||||||| | |||||||||||||  |||| ||||||||||| |||| ||||||||| |  ||||||  ||||||||||||||| ||| || |    
T  15706694 tgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctccctttagattc-ttctcgctattcctctttgtctat 15706792  T
Q  434 tctctccacaacccta 449  Q
    |||||||| |||||||    
T  15706793 tctctccataacccta 15706808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 653 - 736
Target Start/End: Complemental strand, 21415092 - 21415009
Alignment:
Q  653 cctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttac 736  Q
    |||||||||||| || || || || ||||||||| ||||||||||||| |||||||||||||| |||||||| || ||||||||    
T  21415092 cctagctattcatacctccctatgtttaaatcattaaaacactactcatctcactaactacacctcttttcttcccaattttac 21415009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 738
Target Start/End: Original strand, 15706954 - 15707035
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||||| || || |||||||||||  ||||||||||| | |||| ||||||||| ||||||||||| ||||||||||    
T  15706954 gctattcacacctccctatgcttaaatcaataaaacactacttaactcattaactacacctcttttctacccaattttacta 15707035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 516 - 596
Target Start/End: Complemental strand, 19611824 - 19611749
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttt 596  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||  ||||||||||     |||||||||||||||||||||    
T  19611824 atttataagctttaattgagtttgttaccaatctttttagatttatatatgtcct-----ctaggtttgttactaatcttt 19611749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 623 - 738
Target Start/End: Original strand, 23974432 - 23974547
Alignment:
Q  623 tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatctttt 722  Q
    |||| |||||||||| |  |||||||| |  || |||||||||||  | || ||||||||| || ||||||||||||| ||||||||| |||| ||||||    
T  23974432 tttgttactattctttcagtaactacaccgtcttgctattcacactcccctatgcttaaataattaaaacactactcaactcactaaccacacctctttt 23974531  T
Q  723 ctacctaattttacta 738  Q
    ||| | ||||||||||    
T  23974532 ctaaccaattttacta 23974547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 519 - 597
Target Start/End: Complemental strand, 25126135 - 25126063
Alignment:
Q  519 tataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatctttt 597  Q
    |||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||     ||||||||||||||||||    
T  25126135 tataagctctaattgagtttgttac-aatctttttagattactaaatgtcctctag-----gtttgttactaatctttt 25126063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 574
Target Start/End: Original strand, 15706862 - 15706918
Alignment:
Q  518 ttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 574  Q
    ||||||||||||||||||||| |||| |||||||| | |||||||||||| ||||||    
T  15706862 ttataagctctaattgagtttgttacaaatcttttcacattactatatgttctctag 15706918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 11153820 - 11153890
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 399  Q
    |||||||||||||||||||| | |||||||||||| |  ||| ||||||| ||| ||||||||||||||||    
T  11153820 tatgatgaatagagactcccccattacctctagttcgaagaatttgatgaattcatacggtgaaatctctc 11153890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 14645763 - 14645810
Alignment:
Q  335 tgaatagagactccctccttacctctagtttgccgaattgatgatttcc 383  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  14645763 tgaatagagactccc-ccttacctctagttttccgaattgatgacttcc 14645810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 18552479 - 18552412
Alignment:
Q  265 aatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactacacgtatg 333  Q
    |||| ||||||||||| |||||||| |||| |||||||| ||||||| | |||||||||||| ||||||    
T  18552479 aattaaacatgaattcgttaaaagaacatgcaaaacaatataaaaca-acactcttcactacccgtatg 18552412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 596
Target Start/End: Original strand, 23974315 - 23974388
Alignment:
Q  518 ttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttt 596  Q
    ||||||| | ||||||||||| ||||| ||| ||||| |||||||||| |||     ||||||||||||||||||||||    
T  23974315 ttataagttgtaattgagtttgttaccgatcgttttagattactatatttcc-----tctaggtttgttactaatcttt 23974388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 692 - 738
Target Start/End: Complemental strand, 25126002 - 25125956
Alignment:
Q  692 cactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  25126002 cactactcatctcattaaatacacatcttttctacccaattttacta 25125956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 658 - 738
Target Start/End: Original strand, 21499016 - 21499096
Alignment:
Q  658 ctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  21499016 ctattcacacatctctctgcttaaatcattaaaacactacttagctccctaactacacctcttttctacctaattttacta 21499096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 516 - 738
Target Start/End: Original strand, 12786428 - 12786645
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||      ||||||||||||||||||| |||| |  ||||||| || ||    
T  12786428 atttataagctctaattgagtttgttaccaatctttttatattactatatgtc-----ttctaggtttgttactaatc-ttttcaaattactatctgcac 12786521  T
Q  616 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatct-ctctgcttaaatcatcaaaacactactcagctcactaactac 713  Q
    ||||  | |||| ||||||  ||  | ||| ||||||  || ||||||||||| ||| ||||  ||||||| | ||| ||||||||| ||||||||||||    
T  12786522 ctctcgaatttgttactatcatttatgtaattacatcgtcttgctattcacac-tctcctctagttaaatctttaaagcactactcatctcactaactac 12786620  T
Q  714 acatcttttctacctaattttacta 738  Q
    || ||||||||||| ||||||||||    
T  12786621 acctcttttctacccaattttacta 12786645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 575 - 738
Target Start/End: Original strand, 52274557 - 52274720
Alignment:
Q  575 tctaggtttgttactaatcttttttaggttactatttgtacct-ctaattttgatactattcttcctttaactacatcacctagctattcacacatctct 673  Q
    ||||||||||||||||||| ||||||| ||||||| || |||| |  |||||| ||||||| || || |||||||| ||  | | |||||||||  | ||    
T  52274557 tctaggtttgttactaatc-tttttagattactatctgcacctccgtattttgttactattatttctgtaactacaccattttgttattcacactcccct 52274655  T
Q  674 ctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    || |||||||||| ||| ||||||||| ||||| |||||||| | ||||||||| ||||||||||    
T  52274656 ctacttaaatcattaaagcactactcatctcaccaactacacctattttctacccaattttacta 52274720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 18513722 - 18513506
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    ||||||||  |||||| |||||| ||||| || |||||| ||||||||||||||||||      ||||||||||||||||||  |  ||||||| || ||    
T  18513722 atttataacttctaatcgagtttgttaccgatttttttagattactatatgtcctctaa-----gtttgttactaatcttttcaaa-ttactatctgcac 18513629  T
Q  616 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    ||||  | |||  || |||| || || |||||||| |  || |||||||||||  | |||| ||||| |||| ||||||||||||| |||||||| ||||    
T  18513628 ctcttgaatttattattattatttctgtaactacaccgtcttgctattcacactccactctacttaa-tcattaaaacactactcatctcactaattaca 18513530  T
Q  715 catcttttctacctaattttacta 738  Q
    | ||||||||||| ||||||||||    
T  18513529 cctcttttctacccaattttacta 18513506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 12786243 - 12786364
Alignment:
Q  330 tatgatgaatagagactccctcc-ttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 427  Q
    |||||||||||||||||||| || ||||||||||||||  ||||| ||||| ||||||||||||||||||||   ||  || ||||  |||| || ||||    
T  12786243 tatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctcttcag-gttcttctttctatgccacctt 12786341  T
Q  428 gcctcttctctccacaaccctag 450  Q
    |||| ||||||||||||||||||    
T  12786342 gccttttctctccacaaccctag 12786364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 9131584 - 9131527
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctcta 573  Q
    ||||||||||| ||||||||||| ||||||||| ||||| |||||| |||||||||||    
T  9131584 atttataagctttaattgagtttgttaccaatcgttttagattactctatgtcctcta 9131527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 330 - 450
Target Start/End: Complemental strand, 18513906 - 18513786
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 428  Q
    |||| |||||||||||| || |||||||| ||||||  |||| |||||||||||||| | | |||||||||  ||| ||  ||||| ||||||||| | |    
T  18513906 tatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttc-ttctcactattcctcttgg 18513808  T
Q  429 cctcttctctccacaaccctag 450  Q
    ||||||||||||| ||||||||    
T  18513807 cctcttctctccataaccctag 18513786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 738
Target Start/End: Original strand, 91928 - 91996
Alignment:
Q  670 ctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||| ||| | ||||| ||||||||||    
T  91928 ctctctacttaaatcattaaaacactactcatctcactaaatacacctctatactacccaattttacta 91996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 23632244 - 23632181
Alignment:
Q  337 aatagagactccctccttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctc 399  Q
    |||||| |||||| |||||||||||||||  |||||| ||||| ||||||||||||||||||||    
T  23632244 aatagaaactccccccttacctctagtttttcgaatttgatgagttcctacggtgaaatctctc 23632181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 672 - 738
Target Start/End: Complemental strand, 9131439 - 9131373
Alignment:
Q  672 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||| |||||||||| ||| |||| |||| |||||||||||||  ||||||||||| ||||||||||    
T  9131439 ctctacttaaatcattaaagcactgctcatctcactaactacatctcttttctacccaattttacta 9131373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 325 - 450
Target Start/End: Complemental strand, 9131772 - 9131648
Alignment:
Q  325 acacgtatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcct 423  Q
    |||| |||| |||||||||||||| |||||||||| |||||  |||| |||||||||||||||    |||||||||  ||||||  |||| |||||||||    
T  9131772 acacttatggtgaatagagactcc-tccttacctcgagttttgcgaaattgatgatttcctacaacaaaatctctctttagattc-ttcttgctattcct 9131675  T
Q  424 ccttgcctcttctctccacaaccctag 450  Q
    | || | ||||||||||| ||||||||    
T  9131674 ctttacttcttctctccataaccctag 9131648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 738
Target Start/End: Complemental strand, 12484142 - 12483983
Alignment:
Q  580 gtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgct 678  Q
    |||||||||||||| |||| || ||||||| || ||||||| |||||| ||||||||||  | ||||||||  | || |||||| |||| || | |  ||    
T  12484142 gtttgttactaatc-ttttcagattactatctgcacctctagattttgttactattctttttgtaactacacaatcttgctatttacacctcccccaact 12484044  T
Q  679 taaatcatcaaaacactactcagctcactaactacacatc-ttttctacctaattttacta 738  Q
    |||||||| |||||||||| ||  ||||||  ||||| || ||||||||||| ||||||||    
T  12484043 taaatcattaaaacactacacatatcactatttacacctctttttctacctagttttacta 12483983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 738
Target Start/End: Complemental strand, 23632012 - 23631896
Alignment:
Q  623 tttgatactattcttcctttaactacatcacctagctattcacacatctc-tctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 721  Q
    |||| |||||||||| || |||||||| |  || |||||||||||  ||| ||| |||||||||| ||| |||| || | |||| ||||||||| |||||    
T  23632012 tttgttactattctttctgtaactacaccgtcttgctattcacactcctcatctacttaaatcattaaagcactgctaatctcattaactacacctcttt 23631913  T
Q  722 tctacctaattttacta 738  Q
    |||| | ||||||||||    
T  23631912 tctatccaattttacta 23631896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 563
Target Start/End: Complemental strand, 12484161 - 12484114
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactat 563  Q
    ||||||||||||||||||||||| |||| |||||||| | ||||||||    
T  12484161 atttataagctctaattgagtttgttactaatcttttcagattactat 12484114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 18513992 - 18513958
Alignment:
Q  264 aaatttaacatgaattcattaaaagatcatgaaaa 298  Q
    |||||||||||||||| ||||||||||||||||||    
T  18513992 aaatttaacatgaatttattaaaagatcatgaaaa 18513958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 516 - 738
Target Start/End: Complemental strand, 171348 - 171131
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 615  Q
    |||||||| |||||||||||||| |||||||| |||||| ||| |||||||| ||||||     ||||||||||||||||||  |  ||||||| || ||    
T  171348 atttataatctctaattgagtttgttaccaatttttttagatttctatatgttctctag-----gtttgttactaatcttttcaaa-ttactatatgcac 171255  T
Q  616 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 714  Q
    |||| || |||| ||||||| || || |||||| | |  || |||||||||||  |  ||| |||||||||| ||| ||||||||| |||||||||||||    
T  171254 ctctcaaatttgttactattatttctgtaactataccgtcttgctattcacactcccatctacttaaatcattaaagcactactcatctcactaactaca 171155  T
Q  715 catcttttctacctaattttacta 738  Q
    | ||||||||||| ||||||||||    
T  171154 cctcttttctacccaattttacta 171131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 171527 - 171480
Alignment:
Q  335 tgaatagagactccctccttacctctagtttgccgaattgatgatttcc 383  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  171527 tgaatagagactccc-ccttacctctagttttccgaattgatgacttcc 171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 575 - 734
Target Start/End: Original strand, 183149 - 183311
Alignment:
Q  575 tctaggtttgttactaatcttttttaggttactatttgtacctctaattttgatactattcttccttt----aactacatcacctagctattcacacatc 670  Q
    |||| ||||||||||||||||||  || ||||||| ||||||||||  |||| ||||| |||| ||||    |||||||     | ||||||||||||||    
T  183149 tctaagtttgttactaatcttttc-agattactatatgtacctctaggtttgttactaatctttctttttttaactacactgttttgctattcacacatc 183247  T
Q  671 tctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaatttt 734  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||| ||||||    
T  183248 tctctgcttaaatcattaaaacactactaagcttactaactacacctcttttctacccaatttt 183311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 346 - 450
Target Start/End: Original strand, 182966 - 183070
Alignment:
Q  346 tccctccttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaa 444  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||   ||   ||  |||| |||| ||||||||||||||||||||||||    
T  182966 tccccccttacctctagtttgcagaatttgatgattttctacggtgaaatctctatcta-cgttcctctccctatgcctccttgcctcttctctccacaa 183064  T
Q  445 ccctag 450  Q
    ||||||    
T  183065 ccctag 183070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 1859 - 1921
Alignment:
Q  337 aatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctc 399  Q
    ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  1859 aatagagactccccccatacctctagtttgcagaattgatgatttcctacggtgaaatctctc 1921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 623 - 738
Target Start/End: Original strand, 2113 - 2228
Alignment:
Q  623 tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatctttt 722  Q
    |||| |||||||||| | ||||||||| |  || |  ||||||||  | |||||||||||| || ||||||||||||| |||||||||||||| ||||||    
T  2113 tttgttactattctttcattaactacaccgtcttgaaattcacactcccctctgcttaaataattaaaacactactcacctcactaactacacctctttt 2212  T
Q  723 ctacctaattttacta 738  Q
    ||||| ||||||||||    
T  2213 ctacccaattttacta 2228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 516 - 573
Target Start/End: Original strand, 1994 - 2051
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctcta 573  Q
    ||||||||| | ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  1994 atttataagttataattgagtttgttaccaatctttttagattactatatttcctcta 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 450
Target Start/End: Complemental strand, 35571 - 35456
Alignment:
Q  335 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 433  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||  ||   ||  ||| ||||| ||| ||||||| |    
T  35571 tgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctcta-cgttcctcttgctatgccttcttgccttt 35473  T
Q  434 tctctccacaaccctag 450  Q
    |||||||||||||||||    
T  35472 tctctccacaaccctag 35456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 738
Target Start/End: Complemental strand, 35330 - 35214
Alignment:
Q  623 tttgatactattcttcctttaactacatcacctagctattcacacatctc-tctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 721  Q
    |||| |||||||||| || |||| ||| |  || ||||||||||| || | ||| ||||| |||| ||| || |||||| ||||||||||||||||||||    
T  35330 tttgttactattctttctgtaaccacaccgtcttgctattcacacttcccatctacttaactcattaaagcattactcatctcactaactacacatcttt 35231  T
Q  722 tctacctaattttacta 738  Q
    |||||| || |||||||    
T  35230 tctacccaaatttacta 35214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 48262 - 48321
Alignment:
Q  330 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggt 389  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  48262 tatggtgaatagagactccccccttacctctagttttccgaattgatgaattcctacggt 48321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 738
Target Start/End: Original strand, 3089 - 3170
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    ||||||| ||| || ||||||||||||||  ||| ||||||||| |||||||||||||| ||||||| ||| ||||||||||    
T  3089 gctattcgcacctccctctgcttaaatcaataaagcactactcaactcactaactacacctcttttcaacccaattttacta 3170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 574
Target Start/End: Original strand, 2995 - 3053
Alignment:
Q  516 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 574  Q
    ||||||||||||||||||||||| |||| | |||||| | |||||||||||| ||||||    
T  2995 atttataagctctaattgagtttgttacaactcttttcagattactatatgttctctag 3053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 657 - 738
Target Start/End: Original strand, 16589 - 16670
Alignment:
Q  657 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||||||||||  | || ||||||||| |  ||||||||||||| |||||||||||||| |||||| |||| ||||||||||    
T  16589 gctattcacactcccctttgcttaaataagtaaaacactactcaactcactaactacacctcttttatacccaattttacta 16670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 738
Target Start/End: Complemental strand, 7247 - 7183
Alignment:
Q  673 tctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 738  Q
    |||||||||||||| |||||| ||||| | |||| |||||||| ||||| ||||| ||||||||||    
T  7247 tctgcttaaatcattaaaacattactccgttcacaaactacacctctttcctacc-aattttacta 7183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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