View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_42 (Length: 359)
Name: NF11651_low_42
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 2 - 353
Target Start/End: Complemental strand, 33463159 - 33462808
Alignment:
| Q |
2 |
taggagcagcagagaatagatgaataaaatcatcaacagcacttggataatattccttctcatctttttctgcatctttttcatcagagttcaagtttga |
101 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33463159 |
taggagcatcagaaaatagatgaataaaatcatcaacagcacttggataatcttccttctcatctttttctgcatccttttcatcagagttcaagtttga |
33463060 |
T |
|
| Q |
102 |
aactgaactcgatcgatcctcggccacctctctgaggataaaactttcaatatcagaaaatatctgatgctcatttaatatctgttcatcatgatcatga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33463059 |
aactgaactcgatcgatcctcggccacctctctgaggataaaactttcaatatcagaaaatatctgatgctcatttaatatctgttcatcatgatcatga |
33462960 |
T |
|
| Q |
202 |
tcttctccattgtttatctcaaattcaatgtatttttcgccttctttgtcatcttctattgattcaacaatgagtgatcctttgcttaaatagtttccat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33462959 |
tcttctccattgtttatctcaaattcaatgtatttttcgccttctttgtcatcttctattgattcaacaatgagtgatcctttgcttaaatagtttccat |
33462860 |
T |
|
| Q |
302 |
cataccaagaaggcttcaacagataaggagggtaaatttggttattcaagct |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33462859 |
cataccaagaaggcttcaacagataaggagggtaaatttggttattcaagct |
33462808 |
T |
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