View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_low_43 (Length: 356)

Name: NF11651_low_43
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_low_43
NF11651_low_43
[»] chr1 (7 HSPs)
chr1 (8-355)||(33940285-33940632)
chr1 (33-90)||(19637768-19637825)
chr1 (34-90)||(6427351-6427407)
chr1 (26-90)||(7988453-7988517)
chr1 (51-90)||(43966824-43966863)
chr1 (34-90)||(16252888-16252944)
chr1 (62-90)||(31511982-31512010)
[»] scaffold0022 (1 HSPs)
scaffold0022 (20-90)||(99880-99950)
[»] chr5 (8 HSPs)
chr5 (20-90)||(38749565-38749635)
chr5 (33-84)||(32630743-32630794)
chr5 (33-90)||(28296328-28296385)
chr5 (26-84)||(23287357-23287415)
chr5 (33-90)||(3966503-3966560)
chr5 (33-90)||(15410450-15410507)
chr5 (33-90)||(32766945-32767002)
chr5 (26-58)||(34806159-34806191)
[»] chr3 (6 HSPs)
chr3 (28-90)||(47775720-47775782)
chr3 (36-90)||(21419457-21419511)
chr3 (38-90)||(40150573-40150625)
chr3 (120-157)||(38717708-38717745)
chr3 (34-90)||(8039837-8039893)
chr3 (20-84)||(41319318-41319382)
[»] chr8 (5 HSPs)
chr8 (26-86)||(9936807-9936867)
chr8 (34-90)||(33382021-33382077)
chr8 (27-90)||(14634143-14634206)
chr8 (41-90)||(11803267-11803316)
chr8 (41-90)||(12606831-12606880)
[»] chr7 (5 HSPs)
chr7 (33-89)||(3520345-3520401)
chr7 (35-90)||(31808511-31808566)
chr7 (33-84)||(38134414-38134465)
chr7 (34-84)||(12278836-12278886)
chr7 (27-59)||(43434508-43434540)
[»] chr4 (3 HSPs)
chr4 (32-84)||(18513249-18513301)
chr4 (33-90)||(43368079-43368136)
chr4 (32-84)||(3712517-3712569)
[»] chr2 (3 HSPs)
chr2 (34-84)||(18570973-18571023)
chr2 (36-90)||(31026698-31026752)
chr2 (33-90)||(45000848-45000904)
[»] scaffold0110 (1 HSPs)
scaffold0110 (33-90)||(28850-28907)
[»] chr6 (1 HSPs)
chr6 (57-90)||(33419197-33419230)
[»] scaffold0320 (1 HSPs)
scaffold0320 (34-90)||(17038-17094)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 33940285 - 33940632
Alignment:
Q  8 caatgagcaaacacacgtacacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgtgatatcagacacaatac 107  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||     
T  33940285 caatgagcaaacacacgtacacgtagacaccgataataatttatgaaaatgatacaattcaatgtaattatatgtgttgatgtggtatcagacacaatat 33940384  T
Q  108 gtatagatgccaagacacgcttaatccgatgagtatttgtgcttgatagtcccactatctacattaattaatctctgatggtgacaataatccgacaacc 207  Q
    ||||||||  ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33940385 gtatagatatcaagacatgcctaatccgatgagtatttgtgtttgatagtcccactatctacattaattaatctctgatggtgacaataatccgacaacc 33940484  T
Q  208 cagcagctagcgatagagaaataacttcattgatatttatgctactattgaatagtgatgactcacgagtcatgaaagagcaaaattatttcttttcagt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33940485 cagcagctagcgatagagaaataacttcattgatatttatgctactattgaatagtgatgactcatgagtcatgaaagagcaaaattatttcttttcagt 33940584  T
Q  308 tatttgtgcaatggtgtttcgttataatgtgcaaggtggaatttgatg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33940585 tatttgtgcaatggtgtttcgttataatgtgcaaggtggaattagatg 33940632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 19637768 - 19637825
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||||||||||| ||||||||||| |  |||||||||||| |||||||| |||||    
T  19637768 gacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgt 19637825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 6427351 - 6427407
Alignment:
Q  34 acaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||| ||||||| | ||||||| | | ||||||||||||||||||||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgt 6427407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 7988517 - 7988453
Alignment:
Q  26 acacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||| ||||| ||||||||| ||||||| ||| | ||||||||||||| ||| ||||||||||    
T  7988517 acacgtcgacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgt 7988453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 43966824 - 43966863
Alignment:
Q  51 agaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  43966824 agaaaatgatacaattcaatgtaatcacatgtgttggtgt 43966863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 16252944 - 16252888
Alignment:
Q  34 acaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||| |||||||  ||||||||||||  ||||| |||||||||||||||| ||||    
T  16252944 acaccgttaataattcaagaaaatgatatgattcagtgtaattatatgtgttcgtgt 16252888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 31512010 - 31511982
Alignment:
Q  62 caattcaatgtaattatatgtgttggtgt 90  Q
    |||||||||||||||||||||||||||||    
T  31512010 caattcaatgtaattatatgtgttggtgt 31511982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 99880 - 99950
Alignment:
Q  20 acacgtacacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||| ||| || ||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||||    
T  99880 acacggacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgt 99950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 38749635 - 38749565
Alignment:
Q  20 acacgtacacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||| ||| || ||||||||||||||| | | ||||||| | ||||||||||||||||||||||||||||    
T  38749635 acacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 32630794 - 32630743
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    ||||||||||||||| | ||||||| ||| ||||||||||||||||||||||    
T  32630794 gacaccgataataatttgagaaaattatataattcaatgtaattatatgtgt 32630743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 28296328 - 28296385
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||||||||||| | ||||||||| | ||||||||||| | ||||||||||||||    
T  28296328 gacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgt 28296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 23287415 - 23287357
Alignment:
Q  26 acacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    |||||| |||||| |||||||| || |||||||| | |||||||| |||||||||||||    
T  23287415 acacgtcgacaccaataataatttaggaaaatgacataattcaatataattatatgtgt 23287357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 3966503 - 3966560
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||| ||||||| | ||||||| | |||||||| ||||||||||||||| |||||    
T  3966503 gacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgt 3966560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 15410507 - 15410450
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||| ||||||| ||||||||| |||  ||||| |||||| ||||||||||||||    
T  15410507 gacaccgctaataatttaagaaaattatatgattcagtgtaatcatatgtgttggtgt 15410450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 32767002 - 32766945
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||| ||||||| | |||||||   ||||||||||||||||||||||||| ||||    
T  32767002 gacaccgctaataatttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgt 32766945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 34806159 - 34806191
Alignment:
Q  26 acacgtagacaccgataataatgtaagaaaatg 58  Q
    |||||||||||||||||||||| ||||||||||    
T  34806159 acacgtagacaccgataataatttaagaaaatg 34806191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 47775720 - 47775782
Alignment:
Q  28 acgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||| ||||| ||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||    
T  47775720 acgtcgacacggataataatctaaaaaaatgatataattcaatgtaattacatgtgttggtgt 47775782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 21419511 - 21419457
Alignment:
Q  36 accgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||| ||||||| ||||||||| ||| |||||||||||||||||| |||||||||    
T  21419511 accgttaataatttaagaaaataatataattcaatgtaattatatatgttggtgt 21419457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 40150625 - 40150573
Alignment:
Q  38 cgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||||||| | ||||||||||| ||||||||||||| |||||||| |||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgt 40150573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 38717745 - 38717708
Alignment:
Q  120 agacacgcttaatccgatgagtatttgtgcttgatagt 157  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  38717745 agacacgtttaatccgatgagtatttgtgcttcatagt 38717708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 8039893 - 8039837
Alignment:
Q  34 acaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||| ||||||| | ||||||| ||| |||||| ||||||||||||||| |||||    
T  8039893 acaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgt 8039837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 41319382 - 41319318
Alignment:
Q  20 acacgtacacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    ||||| |||||| |||||| |||||||| | | ||||||| | |||||||||||||| |||||||    
T  41319382 acacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgt 41319318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 9936807 - 9936867
Alignment:
Q  26 acacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttg 86  Q
    |||||| |||| |||||||||| ||||||||||||| |||||||| |||| ||||||||||    
T  9936807 acacgtcgacatcgataataatttaagaaaatgatataattcaatataatcatatgtgttg 9936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 33382077 - 33382021
Alignment:
Q  34 acaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||||||||||| ||||||||||| | ||||||  |||||||||||||| |||||    
T  33382077 acaccgataataatttaagaaaatgacataattcagagtaattatatgtgtcggtgt 33382021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 14634206 - 14634143
Alignment:
Q  27 cacgtagacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||| ||||||| ||| ||| ||||||||| ||| |||||| ||||||||||| |||||||||    
T  14634206 cacgtcgacaccgctaacaatttaagaaaattatataattcagtgtaattatatttgttggtgt 14634143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 11803267 - 11803316
Alignment:
Q  41 taataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||| ||||||||| | | |||||| |||||||||||||||||||||    
T  11803267 taataatttaagaaaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 12606880 - 12606831
Alignment:
Q  41 taataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||| |||||    
T  12606880 taataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgt 12606831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 3520401 - 3520345
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtg 89  Q
    |||||||||||| || | ||||||| ||| |||||||||||||||||||||| ||||    
T  3520401 gacaccgataatcatttgagaaaatcatataattcaatgtaattatatgtgtcggtg 3520345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 31808566 - 31808511
Alignment:
Q  35 caccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||||||||| | ||||||||| |||| |||||||||| | ||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgt 31808511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 38134465 - 38134414
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    ||||||||||||||| | ||||||||| | ||||||||||||| ||||||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 12278836 - 12278886
Alignment:
Q  34 acaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    |||| ||||||||| ||||||||||| | |||||| |||||||||||||||    
T  12278836 acactgataataatttaagaaaatgacataattcagtgtaattatatgtgt 12278886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 43434508 - 43434540
Alignment:
Q  27 cacgtagacaccgataataatgtaagaaaatga 59  Q
    ||||||||||||||||||||| |||||||||||    
T  43434508 cacgtagacaccgataataatttaagaaaatga 43434540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 18513301 - 18513249
Alignment:
Q  32 agacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    |||||||||||||||| | ||||||||| | ||||||||||||| ||||||||    
T  18513301 agacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18513249  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 43368079 - 43368136
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||||||||||| ||||||||||| ||| || ||| | || ||||||||||||||    
T  43368079 gacaccgataataatttaagaaaatgacacagtttaatatgatcatatgtgttggtgt 43368136  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 3712569 - 3712517
Alignment:
Q  32 agacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    |||||||| ||||||| | ||||||| ||  ||||||||||||||||||||||    
T  3712569 agacaccgctaataatttgagaaaatcatgtaattcaatgtaattatatgtgt 3712517  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 18570973 - 18571023
Alignment:
Q  34 acaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgt 84  Q
    |||||||||||||| | ||||||||| | ||||||||||||| ||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18571023  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 31026698 - 31026752
Alignment:
Q  36 accgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||||||||| ||||||||||| | ||||||||||||| |||| ||| |||||    
T  31026698 accgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgt 31026752  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 45000904 - 45000848
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||||||| ||| | ||||||||| ||||||||||||||| |||||||| |||||    
T  45000904 gacaccgataa-aatttgagaaaatgacacaattcaatgtaatcatatgtgtcggtgt 45000848  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 28850 - 28907
Alignment:
Q  33 gacaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||||| ||||||| |||||||||   | |||||||||||||||||||||| |||||    
T  28850 gacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtcggtgt 28907  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 33419197 - 33419230
Alignment:
Q  57 tgatacaattcaatgtaattatatgtgttggtgt 90  Q
    ||||| ||||||||||||||||||||||||||||    
T  33419197 tgatataattcaatgtaattatatgtgttggtgt 33419230  T

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Target: scaffold0320 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 17094 - 17038
Alignment:
Q  34 acaccgataataatgtaagaaaatgatacaattcaatgtaattatatgtgttggtgt 90  Q
    |||||| ||||||| | ||||||||  | || |||||||||||||||||||||||||    
T  17094 acaccgttaataatttgagaaaatggcataaatcaatgtaattatatgtgttggtgt 17038  T

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