View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_44 (Length: 355)
Name: NF11651_low_44
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 876970 - 877296
Alignment:
| Q |
17 |
aggtacagcaaattgattaacatcttcatacccatggaaaagagatagattcatatcaactgaaaacatggtcaatctttaatacaaggtgttgcaagtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
876970 |
aggtacagcaaattgattaacatcttcatacccatggaaaagagatagattcatatcaactgaaaacatggtcaatctttaatacaaggtgttgcaagtt |
877069 |
T |
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| Q |
117 |
ttaatggttgagaactgacacagattgggaaatggttcggtttgttgaactgtttcgtctggtgtgtcgggtattgaattgaatgagacagtgatgatgg |
216 |
Q |
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| T |
877070 |
ttaatggttgagaactgacacagattgggaaatggttcggtttgttgaactgtttcgtctggtgtgtcgggtattgaattgaatgagacagtgatgatgg |
877169 |
T |
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| Q |
217 |
atggatggttctggcgaggtgcttctatatcttgttgacgcagccagtgatctctctctttctgagtcatttgcaactacttattgtgaggctttgccgc |
316 |
Q |
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| T |
877170 |
atggatggttctggcgaggtgcttctatatcttgttgacgcagccagtgttctctctctttctgagtcatttgcaactacttattgtgaggctttgccgc |
877269 |
T |
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| Q |
317 |
tctcagagctgactatttctgtctctg |
343 |
Q |
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| T |
877270 |
tctcagagctgactatttctgtctctg |
877296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 871871 - 872050
Alignment:
| Q |
26 |
aaattgattaacatcttcatacccatggaaaagagatagattcatatc-aactgaaaacatggtcaatctttaatacaaggtgttgca------------ |
112 |
Q |
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| T |
871871 |
aaattgattaaaatcttcataccgatggcaaaaaggtagattcataaccaactgaaaacattgtcaatctttaatataagatgttgcaaccttgttttgc |
871970 |
T |
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| Q |
113 |
---agttttaatggttgagaactgacacagattgggaaatggttcggtttgttgaactgtttcgtctggtgtgtcgggtat |
190 |
Q |
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| T |
871971 |
tataattttcatggttgcgaaccgacacagattggg-aatggttcggtttgttgaactgtttcttgtggtatgttgggtat |
872050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 872515 - 872589
Alignment:
| Q |
129 |
aactgacacagattgggaaatggttcggtttgttgaactgtttcgtctggtgtgtcgggtattgaattgaatgag |
203 |
Q |
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| T |
872515 |
aactgacacagattgagaaatggttcggtatgttgaactgtttcttctcgtgtgttgggtatgtatttgaatgag |
872589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 875495 - 875580
Alignment:
| Q |
194 |
attgaatgagacagtgatgatggatggatggttctggcgaggtgcttctatatcttgttgacgcagccagtgatctctctctttctga |
281 |
Q |
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| T |
875495 |
attgaatgaggcagtgatgatgtatggatggttctggcaaggcgtttc--tatcatgttgacgcagccagccatctttctctttctga |
875580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 872404 - 872484
Alignment:
| Q |
32 |
attaacatcttcatacccatggaaaagagatagattcat-atcaactgaaaacatggtcaatctttaatacaaggtgttgcaa |
113 |
Q |
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| T |
872404 |
attaacatcttcatacccatggcaaagaaatagattcataatcaactg--aacgttgtcaatctttaatataagatgttgcaa |
872484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 875340 - 875426
Alignment:
| Q |
25 |
caaattgattaacatcttcatacccatggaaaagagatagattcatatcaactgaaaacatggtcaatctttaatacaaggtgttgca |
112 |
Q |
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|||||||||||||||||||||||||||| | || ||||||||||| | |||||||| | |||| |||||||||||| |||||||| |
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| T |
875340 |
caaattgattaacatcttcatacccatgaataaaagatagattca-acaaactgaaatttttgtcattctttaatacaaagtgttgca |
875426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 867994 - 868090
Alignment:
| Q |
17 |
aggtacagcaaattgattaacatcttcatacccatggaaaagagatagattcata-tcaactgaaaacatggtcaatctttaatacaaggtgttgcaa |
113 |
Q |
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| T |
867994 |
aggtacaacacattgatta-catcttcatacccttggcaaaaagttaaattcataatcaactcaaaactttgttaatctttgatacaaggtgttgcaa |
868090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 15776492 - 15776440
Alignment:
| Q |
176 |
tggtgtgtcgggtattgaattgaatgagacagtgatgatggatggatggttct |
228 |
Q |
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| T |
15776492 |
tggtttgttgggtattgaattgaatgagacagtgatgatgtatggatggttct |
15776440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 15776532 - 15776483
Alignment:
| Q |
113 |
agttttaatggttgagaactgacacagattgggaaatggttcggtttgttg |
163 |
Q |
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| T |
15776532 |
agttttaatggttgagaagtgacacggattggg-aatggtttggtttgttg |
15776483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 42040803 - 42040855
Alignment:
| Q |
176 |
tggtgtgtcgggtattgaattgaatgagacagtgatgatggatggatggttct |
228 |
Q |
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|||| ||| |||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
42040803 |
tggtttgttgggtattgaattgaatgagacagtcatgatgtatggatggttct |
42040855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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