View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_45 (Length: 352)
Name: NF11651_low_45
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_45 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 26 - 343
Target Start/End: Original strand, 14877 - 15192
Alignment:
| Q |
26 |
tgctttctgcaggatttaacaaaggaagaagcttctggttgtaaggaagatattgttttcaatcctaatgtcttcactgaattcaaactcgctgggagtc |
125 |
Q |
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| T |
14877 |
tgctttctgcaggatttaacaaaggaagaagcttctggttgtaaggaagatattgttttcaatcctaatgtcttcactgaattcaaactcgctgggagtc |
14976 |
T |
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| Q |
126 |
cagaggnnnnnnnnnnnnaatcgatatcttaacctacttctaactatgtattttctgcttgaaaacataatgaaacctcttacagtattttgtgacattc |
225 |
Q |
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| T |
14977 |
cagaggtttttttttt--aatctatatctttacctacttctaactatgtattttctgcttgaaaacataatgaaacctcttacagtattttgtgatattc |
15074 |
T |
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| Q |
226 |
ttacatggctctgcctgatcatattctttaggaaatagcagctgatgaagaaaatgtgagaaaagttggtcaatatcttaccgatgttgcacttccgaag |
325 |
Q |
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| T |
15075 |
ttacatggctctgcctgatcatattctttaggaaatagcagctgatgaagaaaatgtgagaaaagttggtcaatatcttaccgatgttgcacttccgaag |
15174 |
T |
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| Q |
326 |
tttgtacaagacctatgc |
343 |
Q |
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| T |
15175 |
tttgtacaagacctatgc |
15192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 53 - 343
Target Start/End: Original strand, 8665818 - 8666105
Alignment:
| Q |
53 |
gaagcttctggttgtaaggaagatattgttttcaatcctaatgtcttcactgaattcaaactcgctgggagtccagaggnnnnnnnnnnnnaatcgatat |
152 |
Q |
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| T |
8665818 |
gaagcttcttgttgtaaggaggatattgttttcaatccgaatgtcttcactgaattcaaactcgctgggagtccagaggttttcttt----aacctatat |
8665913 |
T |
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| Q |
153 |
cttaacctacttctaactatgtattt-tctgcttgaaaacataatgaaacctcttacagtattttgtgacattcttacatggctctgcctgatcatattc |
251 |
Q |
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| T |
8665914 |
ctttgcctacttctaactacatatttatctgcttgaaaacatcatgaaacttcttacagtattttgtgatattcttacatggctctgtctaatcatattc |
8666013 |
T |
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| Q |
252 |
tttaggaaatagcagctgatgaagaaaatgtgagaaaagttggtcaatatcttaccgatgttgcacttccgaagtttgtacaagacctatgc |
343 |
Q |
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| T |
8666014 |
tctaggaaatagcagctgatgaagaaagtgtgagaaaagttagtcaatatcttactgatgttgtactgccgaagtttgtacaagacctatgc |
8666105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 8665738 - 8665778
Alignment:
| Q |
15 |
aattaattgattgctttctgcaggatttaacaaaggaagaa |
55 |
Q |
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| T |
8665738 |
aattaattgattgctttctgcaggatttaacaaaggaagaa |
8665778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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