View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_low_46 (Length: 345)

Name: NF11651_low_46
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_low_46
NF11651_low_46
[»] chr5 (5 HSPs)
chr5 (183-322)||(40599708-40599845)
chr5 (183-322)||(42268611-42268749)
chr5 (108-156)||(40599872-40599920)
chr5 (108-153)||(40681012-40681057)
chr5 (115-155)||(12156496-12156536)
[»] chr7 (3 HSPs)
chr7 (183-318)||(43032282-43032415)
chr7 (183-322)||(24718209-24718346)
chr7 (108-156)||(43032445-43032493)
[»] chr3 (1 HSPs)
chr3 (183-318)||(31699417-31699551)
[»] chr1 (3 HSPs)
chr1 (246-322)||(2077225-2077300)
chr1 (108-153)||(15496015-15496060)
chr1 (108-158)||(2077362-2077412)
[»] chr2 (2 HSPs)
chr2 (183-312)||(9910838-9910966)
chr2 (108-158)||(9910758-9910808)
[»] chr8 (1 HSPs)
chr8 (109-158)||(23635972-23636021)
[»] scaffold0092 (1 HSPs)
scaffold0092 (108-156)||(23312-23360)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 322
Target Start/End: Complemental strand, 40599845 - 40599708
Alignment:
Q  183 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccattacattccaactaccaacccaagtgcaaaaacctta 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  40599845 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcaaaaaa--gacaccattacattccaactaccaacccaagtgcaaaaacctta 40599748  T
Q  283 tgtaaccaacactaataaccacccacatcatcgttaactc 322  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  40599747 tgtaaccaacactaataaccacccacatcatcgttgactc 40599708  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 322
Target Start/End: Complemental strand, 42268749 - 42268611
Alignment:
Q  183 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 281  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||| ||        ||||||||| || || ||||| |||||||||   |||||||  |    
T  42268749 ccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaa--gacaccatttacgtttcaactcccaacccaacaacaaaaacaat 42268652  T
Q  282 atgtaaccaacactaataaccacccacatcatcgttaactc 322  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  42268651 atgtaaccaacaccaataaccacccacatcatcgttaactc 42268611  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 40599920 - 40599872
Alignment:
Q  108 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacg 156  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40599920 gacctagtatcaacaccaccgtgaaaaccaccacgaagcaccacaaacg 40599872  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 40681012 - 40681057
Alignment:
Q  108 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaa 153  Q
    |||| ||||||||||||||| | |||||||||| ||||||||||||    
T  40681012 gaccaagtatcaacaccaccataaaaaccaccatgaaacaccacaa 40681057  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 12156496 - 12156536
Alignment:
Q  115 tatcaacaccaccgtgaaaaccaccacgaaacaccacaaac 155  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  12156496 tatcaacaccaccatggaaaccaccacgaaccaccacaaac 12156536  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 43032415 - 43032282
Alignment:
Q  183 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 281  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||         |||||||| |||||| |||| |||||||||  |||||| ||||    
T  43032415 ccaacacacaagcttctcatcatcaacaccaaaatatcaccaccacgcaaaaaat--acaccatttacattctaactcccaacccaacagcaaaa-cctt 43032319  T
Q  282 atgtaaccaacactaataaccacccacatcatcgtta 318  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43032318 atgtaaccaacaccaataaccacccacatcatcgtta 43032282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 322
Target Start/End: Original strand, 24718209 - 24718346
Alignment:
Q  183 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 281  Q
    ||||||||||||||||| | ||| || ||||||||||||||||||  |        ||||||||| || || ||||| |||||||||   |||||||       
T  24718209 ccaactcacaagcttctaatcattaataccaaaatatcaccacca--cacaaaaaagacaccatttacgtttcaactcccaacccaacaacaaaaacaa- 24718305  T
Q  282 atgtaaccaacactaataaccacccacatcatcgttaactc 322  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  24718306 atgtaaccaacaccaataaccacccacatcatcgttaactc 24718346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 43032493 - 43032445
Alignment:
Q  108 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacg 156  Q
    |||| ||||||||||||||| |  ||||||||||||| |||||||||||    
T  43032493 gaccgagtatcaacaccaccatataaaccaccacgaagcaccacaaacg 43032445  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 31699417 - 31699551
Alignment:
Q  183 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacacca-ttacattccaactaccaacccaagtgcaaaaacctt 281  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| |        ||||||| |||| |||||||| |||||||||   ||||||||||    
T  31699417 ccaactcacaagcttctaatcatcaacaccaaaatatcaccaccatac--aaaaaagacaccatttacgttccaactcccaacccaacaacaaaaacctt 31699514  T
Q  282 atgtaaccaacactaataaccacccacatcatcgtta 318  Q
    | ||| |||||||  |||| |||||||||||||||||    
T  31699515 acgtagccaacacctataagcacccacatcatcgtta 31699551  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 2077300 - 2077225
Alignment:
Q  246 ttacattccaactaccaacccaagtgcaaaaaccttatgtaaccaacactaataaccacccacatcatcgttaactc 322  Q
    ||||||||||| | |||||||||   ||||||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  2077300 ttacattccaaatcccaacccaacatcaaaaacct-atgtaaccatcaccaataaccacccacatcatcgttaactc 2077225  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 15496015 - 15496060
Alignment:
Q  108 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaa 153  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  15496015 gaccaagtatcagcaccaccatgaaaaccaccacgaaacaccacaa 15496060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 2077412 - 2077362
Alignment:
Q  108 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga 158  Q
    |||| ||||||||||||||| || |||||||||||||  ||||||||||||    
T  2077412 gacccagtatcaacaccaccatggaaaccaccacgaagtaccacaaacgga 2077362  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 9910838 - 9910966
Alignment:
Q  183 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccattaca-ttccaactaccaacccaagtgcaaaaacctt 281  Q
    |||||| |||||||||| | ||||||||||||||||||||||||| ||         ||||||||  | ||| |||| |||||||||  | |||||||||    
T  9910838 ccaacttacaagcttctaatcatcaacaccaaaatatcaccaccacgcaaaaaat--acaccatttaagttcaaactcccaacccaacaggaaaaacctt 9910935  T
Q  282 atgtaaccaacactaataaccacccacatca 312  Q
    |||||||||||||  ||||||||||||||||    
T  9910936 atgtaaccaacacctataaccacccacatca 9910966  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 9910758 - 9910808
Alignment:
Q  108 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga 158  Q
    |||| ||||||||||||| | || ||||||||||||| |||||||||||||    
T  9910758 gacccagtatcaacaccatcatggaaaccaccacgaagcaccacaaacgga 9910808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 23635972 - 23636021
Alignment:
Q  109 acctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga 158  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||||||||    
T  23635972 acctagtatcaacaccaccatggaaaccaccatgaagcaccacaaacgga 23636021  T

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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 23312 - 23360
Alignment:
Q  108 gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacg 156  Q
    |||||||||||| ||||||| || |||||||||| || |||||||||||    
T  23312 gacctagtatcagcaccaccatggaaaccaccacaaagcaccacaaacg 23360  T

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