View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_50 (Length: 325)
Name: NF11651_low_50
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 24009442 - 24009761
Alignment:
| Q |
1 |
gctagactctaagcaaataaatactaagctcaggaacaccattgctatcaggattcatcatatagaaagcttcagagtctctagacccaacaattctctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24009442 |
gctagactctaagcaaataaatactaagctcaggaacaccattgctatcaggattcatcatatagaaagcttcagagtctctagacccaacaattctctc |
24009541 |
T |
|
| Q |
101 |
aaactttgccctcatgtacataagttcaccctcttgttctgatccattatcagtccctggtataacaccagcacccattgaaattggctccacagctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24009542 |
aaactttgccctcatgtacataagttcaccctcttgttctgatccattatcagtccctggtataacaccagcacccattgaaattggctccacagctttg |
24009641 |
T |
|
| Q |
201 |
agaatatcccactccttttgtccgcattctcttctgttagcgaatccgcatttcttgccattgcaatatgtcctccactgaggctcttcaagcaacctta |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24009642 |
agaatatcccactccttttgtccacattctcttctgttagcaaatccgcatttcttgccattgcaatatgtcctccactgaggctcttcaagcaacctta |
24009741 |
T |
|
| Q |
301 |
aggttttcttctctgcttct |
320 |
Q |
| |
|
||||||||||||| |||||| |
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| T |
24009742 |
aggttttcttctcagcttct |
24009761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 23227181 - 23227105
Alignment:
| Q |
54 |
ttcatcatatagaaagcttcagagtctctagacccaacaattctctcaaactttgccctcatgtacataagttcacc |
130 |
Q |
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|||||||| |||||||||||||| ||| ||||||||| || |||||| |||| || ||||| ||||| || ||||| |
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| T |
23227181 |
ttcatcatgtagaaagcttcagaatctttagacccaataaccctctcatacttagctctcatatacatgagctcacc |
23227105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 46089918 - 46089794
Alignment:
| Q |
6 |
actctaagcaaataaatactaagctcaggaacaccattgctatcaggattcatcatatagaaagcttcagagtctctagacccaacaattctctcaaact |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
46089918 |
actctaagcaaataaacactaagctcaggagcaccattgctatcaggattcatcatatagaaagcttcagaatctctagagccaacaattctctcaaacc |
46089819 |
T |
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| Q |
106 |
ttgccctcatgtacataagttcacc |
130 |
Q |
| |
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| || ||||| ||||||| |||||| |
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| T |
46089818 |
tagctctcatatacataacttcacc |
46089794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 46089763 - 46089650
Alignment:
| Q |
164 |
aacaccagcacccattgaaattggctccacagctttgagaatatcccactccttttgtccgcattctcttctgttagcgaatccgcatttcttgccattg |
263 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||| | ||| ||||| || |||| || ||||||||||| ||| | ||||| || || || ||||| |
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| T |
46089763 |
aacaccagcacccattgaaataggctcaacagctttcaaaatctcccaatctttttcaccacattctcttctattaccaaatccacacttttttccatta |
46089664 |
T |
|
| Q |
264 |
caatatgtcctcca |
277 |
Q |
| |
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||||| |||||||| |
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|
| T |
46089663 |
caataagtcctcca |
46089650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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