View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_53 (Length: 319)
Name: NF11651_low_53
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 28783814 - 28784114
Alignment:
| Q |
1 |
ggatgtttgaagagaggccaaaagaatttggaggtacatgttgctgatgaaaatttgagtttaccagcagcagcagtacttagggtgtgtttgtcatcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783814 |
ggatgtttgaagagaggccaaaagaatttggaggtacatgttgctgatgaaaatttgagtttaccagcagcagcagtacttagggtgtgtttgtcatcag |
28783913 |
T |
|
| Q |
101 |
attttgacttgatgacaattttggtgttttgcaggccatcatgagcaggacaaggtgcagctgttgcactatgcagctgagcataacattcttctttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783914 |
attttgacttgatgacaattttggtgttttgcaggccatcatgagcaggacaaggtgcagctgttgcactatgcagctgagcataacattcttctttcaa |
28784013 |
T |
|
| Q |
201 |
ttcaccttcatttacaatttcttgaggaagagatactttgaaatttccatttttatcaagctcacctgcccctcttgttttaaaatgtccatttgcttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784014 |
ttcaccttcatttacaatttcttgaggaagagatactttgaaatttccatttttatcaagctcacctgcccctcttgttttaaaatgtccatttgcttct |
28784113 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
28784114 |
t |
28784114 |
T |
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