View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_low_6 (Length: 716)

Name: NF11651_low_6
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_low_6
NF11651_low_6
[»] chr2 (4 HSPs)
chr2 (559-702)||(18929745-18929887)
chr2 (555-696)||(17403237-17403377)
chr2 (587-702)||(25519999-25520113)
chr2 (652-702)||(26651350-26651400)
[»] chr3 (8 HSPs)
chr3 (554-702)||(9033046-9033195)
chr3 (555-696)||(4770168-4770307)
chr3 (584-702)||(4765286-4765403)
chr3 (652-702)||(15687370-15687420)
chr3 (654-696)||(16242605-16242647)
chr3 (652-702)||(29614037-29614087)
chr3 (652-702)||(13428406-13428456)
chr3 (665-702)||(4832190-4832227)
[»] chr6 (4 HSPs)
chr6 (555-702)||(17525299-17525444)
chr6 (585-702)||(31125745-31125861)
chr6 (558-696)||(22394009-22394143)
chr6 (652-702)||(16177706-16177759)
[»] chr8 (3 HSPs)
chr8 (540-702)||(28371544-28371705)
chr8 (651-702)||(23539981-23540032)
chr8 (654-702)||(10662139-10662187)
[»] scaffold0002 (1 HSPs)
scaffold0002 (555-702)||(373696-373841)
[»] chr5 (8 HSPs)
chr5 (582-695)||(20064063-20064173)
chr5 (651-702)||(25951732-25951783)
chr5 (652-696)||(19217727-19217771)
chr5 (621-696)||(17987914-17987988)
chr5 (652-691)||(20058300-20058339)
chr5 (651-702)||(21165604-21165655)
chr5 (649-694)||(23209772-23209817)
chr5 (625-702)||(24878813-24878889)
[»] chr1 (3 HSPs)
chr1 (540-702)||(22619579-22619739)
chr1 (652-696)||(11013493-11013537)
chr1 (655-696)||(20146645-20146686)
[»] chr7 (3 HSPs)
chr7 (639-696)||(2545807-2545864)
chr7 (652-702)||(4173104-4173154)
chr7 (650-686)||(2563197-2563233)
[»] chr4 (2 HSPs)
chr4 (651-702)||(11362109-11362160)
chr4 (618-696)||(10071001-10071078)
[»] scaffold0795 (1 HSPs)
scaffold0795 (652-696)||(5725-5769)
[»] scaffold0555 (1 HSPs)
scaffold0555 (659-702)||(5337-5380)
[»] scaffold0161 (1 HSPs)
scaffold0161 (659-702)||(5345-5388)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 559 - 702
Target Start/End: Complemental strand, 18929887 - 18929745
Alignment:
Q  559 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 658  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  659 tggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    |||||||||||||| |||||||||||||||| |||||| |||||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttga 18929745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 555 - 696
Target Start/End: Complemental strand, 17403377 - 17403237
Alignment:
Q  555 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 654  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  655 tagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacatt 17403237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 702
Target Start/End: Original strand, 25519999 - 25520113
Alignment:
Q  587 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 686  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  687 ggtcaacattggttga 702  Q
     ||||||||| |||||    
T  25520098 agtcaacattagttga 25520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 702
Target Start/End: Complemental strand, 26651400 - 26651350
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| |||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttga 26651350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 554 - 702
Target Start/End: Original strand, 9033046 - 9033195
Alignment:
Q  554 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 651  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttga 9033195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 555 - 696
Target Start/End: Complemental strand, 4770307 - 4770168
Alignment:
Q  555 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 654  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttc-aggggggtaaattgt 4770210  T
Q  655 tagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    ||||||||| ||| | ||| ||| |||||||||| |||||||    
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacatt 4770168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 584 - 702
Target Start/End: Original strand, 4765286 - 4765403
Alignment:
Q  584 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 683  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  684 tgtggtcaacattggttga 702  Q
    |||| |||||||| |||||    
T  4765385 tgtgatcaacattagttga 4765403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 702
Target Start/End: Complemental strand, 15687420 - 15687370
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttga 15687370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 696
Target Start/End: Original strand, 16242605 - 16242647
Alignment:
Q  654 ttagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacatt 16242647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 702
Target Start/End: Original strand, 29614037 - 29614087
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| |||||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttga 29614087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 652 - 702
Target Start/End: Original strand, 13428406 - 13428456
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| |||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttga 13428456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 702
Target Start/End: Original strand, 4832190 - 4832227
Alignment:
Q  665 tttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttga 4832227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 555 - 702
Target Start/End: Complemental strand, 17525444 - 17525299
Alignment:
Q  555 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 654  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  655 tagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttga 17525299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 585 - 702
Target Start/End: Original strand, 31125745 - 31125861
Alignment:
Q  585 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 684  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  685 gtggtcaacattggttga 702  Q
    |||||||||||| |||||    
T  31125844 gtggtcaacattagttga 31125861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 696
Target Start/End: Original strand, 22394009 - 22394143
Alignment:
Q  558 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 657  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  658 ctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
     ||||| ||||||||||||  ||||||||||||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacatt 22394143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 702
Target Start/End: Complemental strand, 16177759 - 16177706
Alignment:
Q  652 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| |||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttga 16177706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 540 - 702
Target Start/End: Complemental strand, 28371705 - 28371544
Alignment:
Q  540 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 639  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattt-t 28371607  T
Q  640 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    | || ||||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| |||||    
T  28371606 ttggtggcaatttgttagttggtattttcactagcataatttaatgtggccaatattagttga 28371544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 651 - 702
Target Start/End: Original strand, 23539981 - 23540032
Alignment:
Q  651 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| |||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttga 23540032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 702
Target Start/End: Complemental strand, 10662187 - 10662139
Alignment:
Q  654 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||| || ||||||||| |||||||||||||||||||||| |||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttga 10662139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 702
Target Start/End: Original strand, 373696 - 373841
Alignment:
Q  555 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 654  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  655 tagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttga 373841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 582 - 695
Target Start/End: Original strand, 20064063 - 20064173
Alignment:
Q  582 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 681  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  682 aatgtggtcaacat 695  Q
    ||||||||||||||    
T  20064160 aatgtggtcaacat 20064173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 702
Target Start/End: Complemental strand, 25951783 - 25951732
Alignment:
Q  651 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttga 25951732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 652 - 696
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 696
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  621 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 652 - 691
Target Start/End: Original strand, 20058300 - 20058339
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtca 691  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtca 20058339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 651 - 702
Target Start/End: Complemental strand, 21165655 - 21165604
Alignment:
Q  651 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| |||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttga 21165604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 694
Target Start/End: Original strand, 23209772 - 23209817
Alignment:
Q  649 atttgttagctggtattttcaccagcctcatttaatgtggtcaaca 694  Q
    |||| ||||||| ||||| ||||||||||| |||||||||||||||    
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaaca 23209817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 702
Target Start/End: Complemental strand, 24878889 - 24878813
Alignment:
Q  625 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| |||||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttga 24878813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 540 - 702
Target Start/End: Original strand, 22619579 - 22619739
Alignment:
Q  540 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 639  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  640 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| |||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttga 22619739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 652 - 696
Target Start/End: Original strand, 11013493 - 11013537
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacatt 11013537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 696
Target Start/End: Complemental strand, 20146686 - 20146645
Alignment:
Q  655 tagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    |||||||||| |||||||| |||||||||||||| |||||||    
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacatt 20146645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 639 - 696
Target Start/End: Complemental strand, 2545864 - 2545807
Alignment:
Q  639 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 2545807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 702
Target Start/End: Original strand, 4173104 - 4173154
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| |||||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttga 4173154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 650 - 686
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  650 tttgttagctggtattttcaccagcctcatttaatgt 686  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 702
Target Start/End: Complemental strand, 11362160 - 11362109
Alignment:
Q  651 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttga 11362109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 696
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  618 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 696
Target Start/End: Original strand, 5725 - 5769
Alignment:
Q  652 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 696  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacatt 5769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 702
Target Start/End: Original strand, 5337 - 5380
Alignment:
Q  659 tggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    |||||||||||||||||||||||| |||||||||| || |||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttga 5380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 702
Target Start/End: Complemental strand, 5388 - 5345
Alignment:
Q  659 tggtattttcaccagcctcatttaatgtggtcaacattggttga 702  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttga 5345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University