View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_61 (Length: 276)
Name: NF11651_low_61
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 37831931 - 37832053
Alignment:
| Q |
138 |
atttttaatcacctattatggtgtctcctggtttggtgatccatgttaatcacttggttagaaagacaacatgttttataactgcattgtgttgcaagat |
237 |
Q |
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| T |
37831931 |
atttttaatcacctattatggtgtctcctggtttggtgatccatgttaatcacttggttagaaagacagcatgttttataactgcattgtgttgcaagat |
37832030 |
T |
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| Q |
238 |
gcctgtcaatgatggtgtgtttc |
260 |
Q |
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| T |
37832031 |
gcctgtcaatgatggtgtgtttc |
37832053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 37831771 - 37831896
Alignment:
| Q |
22 |
gttaagatagatcaagaatttatcttaggagctttcgttttgggactatttg----ttcgtgaaggacctcctttaacatctgtgttggttaagaagctt |
117 |
Q |
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| T |
37831771 |
gttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgtttgttcgtgaaggacctcctttaacatctgtgttggttaagaagctt |
37831870 |
T |
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| Q |
118 |
cagttctttggtccaacattattttt |
143 |
Q |
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| T |
37831871 |
cagttctttggtccaacattattttt |
37831896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 37839910 - 37840033
Alignment:
| Q |
20 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
119 |
Q |
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| T |
37839910 |
cagttaagattaatcaagaatttgtcttaggagccttcattttgggactgtctgttcctgaaggagctcctttaggatctacattggttaagaagcttca |
37840009 |
T |
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| Q |
120 |
gttctttggtccaacattattttt |
143 |
Q |
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| T |
37840010 |
gttctttggtacaacattcttttt |
37840033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 37840145 - 37840194
Alignment:
| Q |
202 |
gacaacatgttttataactgcattgtgttgcaagatgcctgtcaatgatg |
251 |
Q |
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| T |
37840145 |
gacagcatgttttataactgctctttgttgcaagatgcctgtcactgatg |
37840194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 38391582 - 38391459
Alignment:
| Q |
20 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
119 |
Q |
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| T |
38391582 |
cagttaagattaatcaagaatttgtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttca |
38391483 |
T |
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| Q |
120 |
gttctttggtccaacattattttt |
143 |
Q |
| |
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||| ||| || ||||||| ||||| |
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| T |
38391482 |
gttttttagtacaacattcttttt |
38391459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 38400171 - 38400048
Alignment:
| Q |
20 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
119 |
Q |
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| T |
38400171 |
cagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctctaggatctgcattggttaagaagcttca |
38400072 |
T |
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| Q |
120 |
gttctttggtccaacattattttt |
143 |
Q |
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|||||||||| ||||||||||||| |
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| T |
38400071 |
gttctttggtacaacattattttt |
38400048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 38382724 - 38382601
Alignment:
| Q |
20 |
cagttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgttcgtgaaggacctcctttaacatctgtgttggttaagaagcttca |
119 |
Q |
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| T |
38382724 |
cagttaagattaatcaagaatttgccataggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttca |
38382625 |
T |
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| Q |
120 |
gttctttggtccaacattattttt |
143 |
Q |
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||| ||| || ||||||| ||||| |
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| T |
38382624 |
gtttttttgtacaacattcttttt |
38382601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 38382538 - 38382440
Alignment:
| Q |
153 |
ttatggtgtctcctggtttggtgatccatgttaatcacttggttagaaagacaacatgttttataactgcattgtgttgcaagatgcctgtcaatgatg |
251 |
Q |
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||||||||| | ||||||| | | ||| ||| | ||||||||| | || |||| |||| ||||||||||| | ||||||||||||||||||| ||||| |
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| T |
38382538 |
ttatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataactgccctttgttgcaagatgcctgtcactgatg |
38382440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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