View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_62 (Length: 275)
Name: NF11651_low_62
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 42534559 - 42534829
Alignment:
| Q |
1 |
atttatcactaccaaacacacacttaaggagctaaaaaggggtaacctgcaaagggagtccatcgatatcagcacgaatagcgatgatgggagaagaacc |
100 |
Q |
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| T |
42534559 |
atttatcactaccaaacacacacttaaggagctaaaaaggggtaacctgcaaagggagtccatcgatatcagcacgaatagcgatgatgggagaagaacc |
42534658 |
T |
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| Q |
101 |
agaaccaatttgagcaacaataccagttttagcaactggatatgtataaggtataccaagtttgtcaagttcactgcggataagagcacttgtgttgtgt |
200 |
Q |
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| T |
42534659 |
agaaccaatttgagcaacaataccagttttagcaactggatatgtataaggtataccaagtttgtcaagttcactgcggataagagcacttgtgttgtgt |
42534758 |
T |
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| Q |
201 |
tcttggaaagccaattctgggtgttgatgaatctctcttctcactgaaaccaaccaatctttttccttctg |
271 |
Q |
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| T |
42534759 |
tcttggaaagccaattctgggtgttgatgaatctctcttctcactgaaaccaaccaatctttttccttctg |
42534829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 61 - 261
Target Start/End: Original strand, 42539742 - 42539931
Alignment:
| Q |
61 |
catcgatatcagcacgaatagcgatgatgggagaagaaccagaaccaatttgagcaacaataccagttttagca-actggatatgtataaggtataccaa |
159 |
Q |
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| T |
42539742 |
catctatatcagcacgaatagaaatgatgggtggagaaccagagccaatttgggcaactataactgttttggcagactgggtatgtataaggtat----- |
42539836 |
T |
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| Q |
160 |
gtttgtcaagttcactgcggataagagcacttgtgttgtgttcttggaaagccaattctgggtgttgatgaatctctcttctcactgaaaccaaccaatc |
259 |
Q |
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| T |
42539837 |
----gtcaagttccttgcgtataaaagtacttgtgtt---ttcttgaaaggctaattctgggtgttgatgaatctcccttctcactgaaaccaaccaatc |
42539929 |
T |
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