View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_70 (Length: 252)
Name: NF11651_low_70
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_70 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 28783562 - 28783311
Alignment:
| Q |
1 |
ctcttcctccacctacacctgtctatgagaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacc |
100 |
Q |
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| T |
28783562 |
ctcttcctccacctacacctgtctacgagaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacc |
28783463 |
T |
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| Q |
101 |
tcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaaccatgt |
200 |
Q |
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| T |
28783462 |
tcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaaccatgt |
28783363 |
T |
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| Q |
201 |
ccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaac |
252 |
Q |
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| T |
28783362 |
ccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaac |
28783311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 28783624 - 28783448
Alignment:
| Q |
5 |
tcctccacctacacctgtctatgagaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctctt |
104 |
Q |
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| T |
28783624 |
tcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctctt |
28783525 |
T |
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| Q |
105 |
cctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
181 |
Q |
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| T |
28783524 |
cctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgt |
28783448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 28783278 - 28783206
Alignment:
| Q |
180 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaac |
252 |
Q |
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| T |
28783278 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaac |
28783206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 28783634 - 28783487
Alignment:
| Q |
28 |
agaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatca |
127 |
Q |
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| T |
28783634 |
agaaaccttgtcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctccacctacacctgtctacga |
28783535 |
T |
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| Q |
128 |
taaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
175 |
Q |
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| T |
28783534 |
gaaacctcttcctccgcctgtgcctgtttaccataaacctctccctcc |
28783487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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