View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_75 (Length: 248)
Name: NF11651_low_75
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7798207 - 7797971
Alignment:
| Q |
1 |
aaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaatacccttcaac |
100 |
Q |
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| T |
7798207 |
aaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaacacccttcaac |
7798108 |
T |
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| Q |
101 |
cctttttaaatggcttatggaatttgtttagcatatagaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaatttg |
200 |
Q |
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| T |
7798107 |
cctttttaaatggcttatggaatttgtttagtatatggaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaattgg |
7798008 |
T |
|
| Q |
201 |
aaaaaagatatcatggaagaattttcttctccacctt |
237 |
Q |
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| T |
7798007 |
aaaaaagatatcatggaagaattttcttctccacctt |
7797971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7817477 - 7817241
Alignment:
| Q |
1 |
aaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaatacccttcaac |
100 |
Q |
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| T |
7817477 |
aaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaacacccttcaac |
7817378 |
T |
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| Q |
101 |
cctttttaaatggcttatggaatttgtttagcatatagaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaatttg |
200 |
Q |
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| T |
7817377 |
cctttttaaatggcttatggaatttgtttagtatatggaagcataatcactcgaataccaccgtatcactaattcaatacaaatcacttacgggaattgg |
7817278 |
T |
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| Q |
201 |
aaaaaagatatcatggaagaattttcttctccacctt |
237 |
Q |
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| T |
7817277 |
aaaaaagatatcatggaagaattttcttctccacctt |
7817241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 21539826 - 21539777
Alignment:
| Q |
189 |
tacgggaatttgaaaaaag-atatcatggaagaattttcttctccacctt |
237 |
Q |
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| T |
21539826 |
tacgggaattggaaaaaaggaaatcatagaagaattttcttctccacctt |
21539777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 20637114 - 20637163
Alignment:
| Q |
189 |
tacgggaatttgaaaaaag-atatcatggaagaattttcttctccacctt |
237 |
Q |
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| T |
20637114 |
tacgggaattggaaaaaaggaaatcatagaagaattttcttctccacctt |
20637163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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