View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_low_76 (Length: 247)
Name: NF11651_low_76
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_76 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 54218506 - 54218267
Alignment:
| Q |
1 |
aatgtcaagttattgtaaggaacgcagatcaaaaacttgatcgtatcttcattaccaagcaaccaactaatgttattaaagatggtttgcacattctgct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54218506 |
aatgtcaagttattgtaaggaacacagatcaaaaacttgatcgtatcttcattaccaagcaaccaactaatgttattaaagatggtttgcacattctgct |
54218407 |
T |
|
| Q |
101 |
tgattccatttgtagaggaatgaaagtcctttaatcaaaattgaatcatcaatggttttacatgtataacgccccttcttgcatcatgtatcttggtttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54218406 |
tgattccatttgtagaggaatgaaagtcctttaatcaaaattgaatcatcaatggttttacatgtataacgccccttctcgcatcatgtatcttggtttg |
54218307 |
T |
|
| Q |
201 |
gccccaagattctcttagataacttcaataattccctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54218306 |
gccccaagattctcttagataacttcaataattccctttg |
54218267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University