View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_low_77 (Length: 242)

Name: NF11651_low_77
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_low_77
NF11651_low_77
[»] chr3 (10 HSPs)
chr3 (11-219)||(4582485-4582693)
chr3 (24-221)||(5155185-5155382)
chr3 (121-219)||(4614258-4614357)
chr3 (85-219)||(46469609-46469743)
chr3 (22-149)||(46490021-46490148)
chr3 (13-172)||(46478256-46478415)
chr3 (103-206)||(51942034-51942137)
chr3 (17-206)||(16023879-16024068)
chr3 (19-99)||(47398309-47398389)
chr3 (11-67)||(47414945-47415001)
[»] chr4 (3 HSPs)
chr4 (20-220)||(35160437-35160637)
chr4 (52-206)||(35154060-35154214)
chr4 (52-204)||(15555004-15555156)
[»] chr8 (2 HSPs)
chr8 (52-220)||(9693405-9693573)
chr8 (19-197)||(9677631-9677809)
[»] chr2 (3 HSPs)
chr2 (52-218)||(20154344-20154510)
chr2 (19-218)||(20143439-20143638)
chr2 (52-218)||(20169905-20170071)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 4582485 - 4582693
Alignment:
Q  11 gagaagcaaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgag 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582485 gagaagcaaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgag 4582584  T
Q  111 cgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582585 cgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtg 4582684  T
Q  211 attgattca 219  Q
    |||||||||    
T  4582685 attgattca 4582693  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 5155382 - 5155185
Alignment:
Q  24 gttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagc 123  Q
    ||||||||| ||||| ||||| || || ||||||||||||||||||| |  |||||| || ||||||||||||||||| ||||| ||  ||||||| ||     
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 5155283  T
Q  124 gaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattcatg 221  Q
    || ||||| ||||||||||||||||| ||| |||||||  |||| |||| ||||||||| |  |||||||| ||||||||||| ||||||||||||||    
T  5155282 gacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggcgatgcgtagggaaacatttgtttggttggtgattgattcatg 5155185  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 4614258 - 4614357
Alignment:
Q  121 agcgaaagtggggaaaa-cacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattca 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||| ||||    
T  4614258 agcgaaagtggggaaaaacacaatgttcttctctgattcttttgagaaaagatgtttggcgattctgagggaaacttttgtctggttactgattgtttca 4614357  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 46469743 - 46469609
Alignment:
Q  85 tcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattc 184  Q
    |||||| |||||||||  ||| |||||  ||||||||| || || || |||||||||| |||||| |||||||||||||||||||||| |||||| ||      
T  46469743 tcagaggcagcagcgacaatgttgagcataacttggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggccatgt 46469644  T
Q  185 tgagggaaacttttgtttggttagtgattgattca 219  Q
    | ||||||||||| |||||||| ||||||||||||    
T  46469643 taagggaaactttggtttggttggtgattgattca 46469609  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 46490148 - 46490021
Alignment:
Q  22 gagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttgga 121  Q
    |||||||| ||||| || || |||||  | |||||||| |||||||||| |  |||||  |||||||||||||||||||| ||||||||  |||||||||    
T  46490148 gagttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagtacaacttgga 46490049  T
Q  122 gcgaaagtggggaaaacacaatgttctt 149  Q
    |||||||||| || ||||||||||||||    
T  46490048 gcgaaagtggcgataacacaatgttctt 46490021  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 46478415 - 46478256
Alignment:
Q  13 gaagcaaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcg 112  Q
    ||||| ||| ||||||||||||| || ||||| ||  ||||||||| || ||| |||| |   ||||| || ||||| |||| |||||| || || |||     
T  46478415 gaagcgaagtagttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagca 46478316  T
Q  113 caacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagat 172  Q
    |||||||||| |||||||| |||||||| ||||| || ||||||||||| ||||||||||    
T  46478315 caacttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagat 46478256  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 51942137 - 51942034
Alignment:
Q  103 atgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgttt 202  Q
    ||||||||| ||||||| || || | ||| ||||| || ||||| || ||||||| ||||||||| | || ||||||||||||||||||||||  |||||    
T  51942137 atgctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgttt 51942038  T
Q  203 ggtt 206  Q
    ||||    
T  51942037 ggtt 51942034  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 16024068 - 16023879
Alignment:
Q  17 caaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaac 116  Q
    ||||||||||||||| ||  || ||||  ||| | ||||||| ||||||||||| |  ||| ||||| || || ||||||||||| | ||||||  ||||    
T  16024068 caaaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaac 16023969  T
Q  117 ttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggtt 206  Q
    ||| || || || || |||||||  ||||| || ||||||| |||||| ||||||| |||| ||||  ||||||| || || ||||||||    
T  16023968 ttgaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttgacgatgttgagggatacgttggtttggtt 16023879  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 47398309 - 47398389
Alignment:
Q  19 aaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcg 99  Q
    |||||||||||||| ||||| || || ||   ||||||||||||||||| || |  |||||| || |||||||||||||||    
T  47398309 aaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcg 47398389  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 47414945 - 47415001
Alignment:
Q  11 gagaagcaaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagct 67  Q
    |||| ||||||||||||||||||||| | ||||| |||   ||||||||||||||||    
T  47414945 gagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagct 47415001  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 35160637 - 35160437
Alignment:
Q  20 aggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttg 119  Q
    ||||||||||||||||||| |||||  |  | |||||||| |||||||||| |  ||| |  || ||||||||||||| ||| ||||||||| |||||||    
T  35160637 aggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttg 35160538  T
Q  120 gagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattca 219  Q
    ||| || | ||| |||||||| |||||||| ||||||||||| |||||||||| |||| | ||  |||| |||||||| ||||||||  || ||||||||    
T  35160537 gagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggttgttgcttgattca 35160438  T
Q  220 t 220  Q
    |    
T  35160437 t 35160437  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 35154214 - 35154060
Alignment:
Q  52 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 151  Q
    ||||||| ||||||||||| || |||||  |||||||||||||||||||| ||    ||| | |||||||| || |  || |||||||| || ||||| |    
T  35154214 aggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggagagacaaaggcgaaaacacgatattctttt 35154115  T
Q  152 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggtt 206  Q
    ||||||| |||||||| |||| |||||||||  ||||||||||||| || |||||    
T  35154114 ctgattcctttgagaaaagatgtttggcgatagtgagggaaactttcgtatggtt 35154060  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 15555156 - 15555004
Alignment:
Q  52 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 151  Q
    |||||||||||||| ||||    |||||  || ||||||||||||||||| ||||||||   |||||| | ||| || || |||||||||||||| || |    
T  15555156 aggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgagaataacttgaatcgagagaggtgaaaacacaatgttgttgt 15555057  T
Q  152 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttgg 204  Q
      | || ||| |||||||||| ||| |||||| |||| ||||| || ||||||    
T  15555056 tgggttgtttagagaagagatgtttagcgattttgagtgaaacgttggtttgg 15555004  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 9693405 - 9693573
Alignment:
Q  52 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 151  Q
    |||||||| |||||||||| |   || || |||||||||||| ||||||| ||||||||  |||||||||| || | ||| ||||| || |  ||||| |    
T  9693405 aggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattcttgt 9693504  T
Q  152 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattcat 220  Q
    ||||||||||||||||||||| |||||||||  ||||||||| ||| | |||||| ||| |||||||||    
T  9693505 ctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttggttggtgcttgattcat 9693573  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 9677631 - 9677809
Alignment:
Q  19 aaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaactt 118  Q
    |||||||||||||||||  | |||||  |  | ||||||||||||||||||| |   || || || ||||||||||||||||| || |||||  ||||||    
T  9677631 aaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaactt 9677730  T
Q  119 ggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttt 197  Q
    |||| || | ||| ||||| || | ||| || |||||||||||||||||||||| ||||||||   |||||||||||||    
T  9677731 ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcgaccgtgagggaaacttt 9677809  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 218
Target Start/End: Complemental strand, 20154510 - 20154344
Alignment:
Q  52 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 151  Q
    |||||||||| |||||||| |  |||||| || ||||||||||||||| | | ||||| | |||||||||| || | ||| ||||||||||||||||| |    
T  20154510 aggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttgt 20154411  T
Q  152 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattc 218  Q
    |||||| |||  |||| |||| |||||||||   |||| |||| ||| ||||||| |||||||||||    
T  20154410 ctgattgtttcaagaacagatgtttggcgatgtcgaggaaaacctttatttggttggtgattgattc 20154344  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 20143638 - 20143439
Alignment:
Q  19 aaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaactt 118  Q
    |||||||| |||||||  || |||||  || | |||||||||| ||| |||| |  ||||||  | ||||| ||||||||||| | ||||||| ||| ||    
T  20143638 aaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaattt 20143539  T
Q  119 ggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattc 218  Q
    |||| || ||||| |||||||| |||||||| ||||||| |||  | || |||| | |||||||   ||||||||| |||||||||||||||||||||||    
T  20143538 ggagtgatagtggcgaaaacacgatgttcttgtctgattgtttcaacaacagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgattc 20143439  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 20169905 - 20170071
Alignment:
Q  52 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 151  Q
    |||||||||| ||| |||| | ||||||| || ||||| |||| ||| || | ||||||| ||| ||| || || ||||| |||||||| | ||| || |    
T  20169905 aggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagcacaatttgaagtgatagtggtgaaaacacgacgtttttgt 20170004  T
Q  152 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattc 218  Q
    |||||| |||  | || |||| | |||| ||   ||||||||| |||||||||||||||||||||||    
T  20170005 ctgattgtttcaacaacagatgtctggccatgtcgagggaaacctttgtttggttagtgattgattc 20170071  T

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