View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_78 (Length: 241)
Name: NF11651_low_78
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42534492 - 42534269
Alignment:
| Q |
1 |
ctaaaaaacaattgtagaggcaaaagctctgaatgctagttaccttagaatcaattctagttgttgaaccaaacatacactgttcttatgctccttgagg |
100 |
Q |
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| T |
42534492 |
ctaaaaaacaattgtagaggcaaaagctctgaatgctagttaccttagaatcaattctagttattgaaccaaacatacactgttcttatgctccttgagg |
42534393 |
T |
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| Q |
101 |
agaatattgtttttcaaataaggtaatattttttatctgatgttggtgatgcttggttaggaacttgttgagtgggaatacaagagcaaaattgatggca |
200 |
Q |
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| T |
42534392 |
agaatattgtttttcaaataaggtaatattttttatctgatgttggtgatgcttggttaggaacttgttgagtgggaatacaagagcaaaattgatggca |
42534293 |
T |
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| Q |
201 |
gaatgcatgcttgtggacatgatg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42534292 |
gaatgcatgcttgtggacatgatg |
42534269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 42539204 - 42539107
Alignment:
| Q |
130 |
tttttatctgatgttggtgatgcttggttaggaactt---gttgagtgggaatacaagagcaaaattgatggcagaatgcatgcttgtggacatgatg |
224 |
Q |
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|||| ||||||||| |||||||||||||||| ||| | |||||| |||| |||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
42539204 |
ttttgatctgatgtctttgatgcttggttaggagcttagtgatgagtgagaattcaagagcaaagttaatggcagaatgcatgcttgtggagatgatg |
42539107 |
T |
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