View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_80 (Length: 240)
Name: NF11651_low_80
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 25307492 - 25307320
Alignment:
| Q |
17 |
gaagaagagttgttgagtggacgtaggaggaagagggtgtggtgtgcaacattgttgctacgggagaatgagccacacagactcactttgttctcaattg |
116 |
Q |
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| T |
25307492 |
gaagaagagttgttgagtggacgtaggaggaagagggtatggtatgcaacattgttgctacgggagaatgagccacacagactcactttgttctcaattg |
25307393 |
T |
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| Q |
117 |
atttttagtggttcttagtcattcattcccacattgaagccaagcaaccagggccactacttacattgaaaac |
189 |
Q |
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| T |
25307392 |
attttcagtggttcttagtcattcattcccacattaaagccaagcaaccagggccactacttacattaaaaac |
25307320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 25307298 - 25307249
Alignment:
| Q |
191 |
acataaaaaattcatcataaagtttaagtgagttgggtcgagatgctcgt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25307298 |
acataaaaaattcatcataaagtttaagtgagttgggtccagatgctcgt |
25307249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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