View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_86 (Length: 238)
Name: NF11651_low_86
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_86 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 7798543 - 7798321
Alignment:
| Q |
16 |
atcttaccattgccattgtcgttagccttaagtacaataaaaacatatttgagcaatgggagtgccaaaatggtgtaatatatgagagataagaccccaa |
115 |
Q |
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| T |
7798543 |
atcttaccattgccattgtcgttagccttaagtacaataaagacatatttgagcaatgggagtgccaaaatggtgtaatatatgacagataagaccccaa |
7798444 |
T |
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| Q |
116 |
gaatgtcatcagtgtgatcaataccctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaa |
215 |
Q |
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| T |
7798443 |
gaatgtcatcagtgtgatcaataccctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaa |
7798344 |
T |
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| Q |
216 |
tgccaaagcaagagtagccatcc |
238 |
Q |
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| T |
7798343 |
tgccaaagcaagagtagccatcc |
7798321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 7817813 - 7817591
Alignment:
| Q |
16 |
atcttaccattgccattgtcgttagccttaagtacaataaaaacatatttgagcaatgggagtgccaaaatggtgtaatatatgagagataagaccccaa |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7817813 |
atcttaccgttgccattgtcgttagccttaagtacaataaagacatatttgagcaatgggagtgccaaaatggtgtaatatatgagagataagaccccaa |
7817714 |
T |
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| Q |
116 |
gaatgtcatcagtgtgatcaataccctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaa |
215 |
Q |
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| T |
7817713 |
gaatgtcatcagtgtgatcaataccctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaa |
7817614 |
T |
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| Q |
216 |
tgccaaagcaagagtagccatcc |
238 |
Q |
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| T |
7817613 |
tgccaaagcaagagtagccatcc |
7817591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 41132882 - 41132942
Alignment:
| Q |
163 |
acataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaag |
223 |
Q |
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| T |
41132882 |
acataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaag |
41132942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 6519082 - 6519139
Alignment:
| Q |
17 |
tcttaccattgccattgtcgttagccttaagtacaataaaaacatatttgagcaatgg |
74 |
Q |
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|||||||||| ||||||| |||||| ||||| |||||||||||| ||||||||||| |
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| T |
6519082 |
tcttaccatttgcattgtccttagcccgaagtataataaaaacataattgagcaatgg |
6519139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 27452077 - 27452017
Alignment:
| Q |
45 |
aagtacaataaaaacatatttgagcaatggga-gtgccaaaatggtgtaatatatgagaga |
104 |
Q |
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|||||||||||||||||| ||||||||||| | | | |||||||||||| |||||||||| |
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| T |
27452077 |
aagtacaataaaaacataattgagcaatggaagggggcaaaatggtgtatcatatgagaga |
27452017 |
T |
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