View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_low_88 (Length: 235)
Name: NF11651_low_88
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_88 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 51908337 - 51908133
Alignment:
| Q |
15 |
acatcatattcacacccaaacaaaacagaacaaaacatgataatcaaacttacttcctcagtcaaagacctccacttctcaccagcttccttaccaacct |
114 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51908337 |
acatcatattcacaccaaatcaaaacagaacaaaacatgataatcaaacttacttcctcagtcaaagacctccacttctcaccagcttccttaccaacct |
51908238 |
T |
|
| Q |
115 |
atttttcacaatacaagtaacatgatcaataataaacccttagataagttaatcaaacaatgtcaaacacaatacaactgaacaatttttcattaccctc |
214 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51908237 |
atttttcacaatacaaataacatggtcaataataaacccttagataagttaatcaaacaatgtcaaacacaatacaactgaacaatttttcattaccctc |
51908138 |
T |
|
| Q |
215 |
ttaac |
219 |
Q |
| |
|
||||| |
|
|
| T |
51908137 |
ttaac |
51908133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 6114521 - 6114384
Alignment:
| Q |
83 |
cctccacttctcaccagcttccttaccaacctatttttcacaatacaagtaacatgatcaataataaacccttagataagttaatcaaacaatgtcaaac |
182 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
6114521 |
cctccacttctcgccatcttccttaccgacctagtttttgcaatacaagtaacatgatcaataattaatccttagataagttaatcaaacaataccaaac |
6114422 |
T |
|
| Q |
183 |
acaatacaactgaacaa-tttttcattaccctcttaac |
219 |
Q |
| |
|
||||| |||| ||||| ||||||| |||||||||||| |
|
|
| T |
6114421 |
acaattaaactaaacaattttttcagtaccctcttaac |
6114384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 6115340 - 6115285
Alignment:
| Q |
35 |
caaaacagaacaaaacatgataatcaaacttacttcctcagtcaaagacctccact |
90 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6115340 |
caaaacagaacaaaacattgtaaccaaacttacttcctcagtcaaagacctccact |
6115285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University