View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_89 (Length: 231)
Name: NF11651_low_89
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 5685841 - 5686038
Alignment:
| Q |
16 |
gaatattatttcaatacttgaacaaaagttgctgaagagcgaagactatatgtctgggccaagttaatgagaaagaccaaatgcagaaatgtgtggaaat |
115 |
Q |
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| T |
5685841 |
gaatattatttcaatacttgaacaaaagttgctgaagagtgaagactatatgtctgggccaagttaatgagaaagaccaaatgcagaaatgtgtggaaat |
5685940 |
T |
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| Q |
116 |
gtaagaatttagaaccataatccaaatgttttattaaagagtggtaaatttatgttgtacaatgatagtgttactatgcatccatgtcaataatgaaag |
214 |
Q |
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| T |
5685941 |
gtaagaatttagaaccataatccaaatgttttattaaagagtggtata-ttatgttgtacaatgatagtgctactatgcatccatgtgaataatgaaag |
5686038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 5697709 - 5697820
Alignment:
| Q |
103 |
aatgtgtggaaatgtaagaatttagaaccataatccaaatgttttattaaagagtggtaaatttatgttgtacaatgatagtgttactatgcatccatgt |
202 |
Q |
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| T |
5697709 |
aatgtgtggaaatgtaagaatttagaaccataatccaaatgttttattaaagagtggtaaatttatgttgtacaatgatagtgttactatgcatccatgt |
5697808 |
T |
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| Q |
203 |
caataatgaaag |
214 |
Q |
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| T |
5697809 |
gaataatgaaag |
5697820 |
T |
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