View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_9 (Length: 676)
Name: NF11651_low_9
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 19 - 663
Target Start/End: Complemental strand, 30690839 - 30690195
Alignment:
| Q |
19 |
atggatgtctgccttctcacttacttttcggtttcattgtagtacataattgaattgtaggaaatactcaatacatgcatgggattcttcttgtatttta |
118 |
Q |
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| T |
30690839 |
atggatgtctgccttctcacttacttttcggtttcactgtagtacataattgaattgtaggaaatactcaatacatgcatgggattattcttgtatttta |
30690740 |
T |
|
| Q |
119 |
cattaagggtggacggaaaatagtacgtttcctcgtgagtcctgatgatgtgactttgctacagtagctagggtgtgttttgttacagctgaattctcag |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30690739 |
cattaagggtggacggaaaatagtacatttcctcgtgagtcctgatgatgtgactttgctacagtagctagggtgtgttttgttacagctgaattctcag |
30690640 |
T |
|
| Q |
219 |
ctcttatggaagttccaatgttattgttgtgagagcaagttggagtttaacagattccatcgataatttcatcgttgtctggagagaatagatttgaatt |
318 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
30690639 |
ctcttatggaagttccaatgttattgttgtgggaacaagttggagtttaacatattccatcgataatttcatcattgtctggagagtatagatttgaatt |
30690540 |
T |
|
| Q |
319 |
gttttgcgttgacaggatcaagaatgaggataaactgattcaagaagaaggtgtggagactctttcagaagcagagcttcgtcaagcttgtagagaccga |
418 |
Q |
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| T |
30690539 |
gttttgctttgacaggatcaagaatgatgataaactgattcaagaagaaggtgtggaggctctttcagaagcagagcttcgtcaagcttgtagagaccga |
30690440 |
T |
|
| Q |
419 |
ggattgcttggattgcgttcagtggaagaaatgcggcaacaggttaataataaacgtttcaattgaatttgtgtactggagctcaattctgaaatctcca |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
30690439 |
ggattgcttggattgcgttcagtggaagaaatgcggcaacaggttaataataaacgtttcaattgaatttgtgtactggggctcaattttgaaatctcca |
30690340 |
T |
|
| Q |
519 |
acaatgtgttactttactagctgggcaatttttgtgaacgagaaactggccataatggctacttttagaaatcagaaccttcttccttannnnnnngcag |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30690339 |
acaatgtgttactttactagctgggcaatttttgtgaacgagaaactggccataatggctacttttagaaatcagaaccttcttccttatttttttgcag |
30690240 |
T |
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| Q |
619 |
tttcagaaactctatcatctcgtaattgctactttgagaaccttc |
663 |
Q |
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| T |
30690239 |
tttcagaaactctatcctctcgtaattgctactttgagaaccttc |
30690195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 347 - 463
Target Start/End: Complemental strand, 36750300 - 36750184
Alignment:
| Q |
347 |
gataaactgattcaagaagaaggtgtggagactctttcagaagcagagcttcgtcaagcttgtagagaccgaggattgcttggattgcgttcagtggaag |
446 |
Q |
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|||||| ||||||||||||||||||| || ||||||||||||| || || || ||| ||||||||| ||||| ||||||| |||||||| || |||| |
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| T |
36750300 |
gataaattgattcaagaagaaggtgtagattctctttcagaagctgaactccgggaagattgtagagagcgaggcatgcttgggttgcgttctgttgaag |
36750201 |
T |
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| Q |
447 |
aaatgcggcaacaggtt |
463 |
Q |
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| T |
36750200 |
aaatgcgccaacaggtt |
36750184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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