View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_high_1 (Length: 589)
Name: NF11652_high_1
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 149 - 577
Target Start/End: Original strand, 42777737 - 42778168
Alignment:
| Q |
149 |
tcagataaaatatctaaatcatatttcctttgattcaaaatgatacatttgtgaagttgagccaattccaaaccaaagatgtatttcaaggagcctaag- |
247 |
Q |
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| T |
42777737 |
tcagataaaatatctaaatcatatttcctttgattcaaaatgatacatttgtgaagttgagccaattccaaaccaccgatgtatttcaaggagcctaaga |
42777836 |
T |
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| Q |
248 |
--tccttaattttgaatttgtcatcaagaaggagtttaactgaatctatatatgaaagggatgttcctgtgagtatgacatcatctacataaatcgtcaa |
345 |
Q |
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| T |
42777837 |
cctccttaattttgaatttgtcatcaagaaggagtttaactgaatctatatatgaaatggatgttcctgtgagcatgacatcatctacataaaccgtcaa |
42777936 |
T |
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| Q |
346 |
cgttgtaaagatagtagaagtccttcttgtgaataaggaatgatgtgatttggattgaatgaaacaaattgagattagaaaactagatggttaggagaac |
445 |
Q |
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| T |
42777937 |
cgttgtaaagatagtagaagttcttcttatgaataaggaatgatgtgatttggattgaatgaaacaaattgagattagaaaactagatggttaggagaac |
42778036 |
T |
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| Q |
446 |
cattggtgacttgcttgttttaaaccataagagatttcagtaatctgcaaacttgactaggatttgaggaagtcacaccaagaggaagctttatataaac |
545 |
Q |
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| T |
42778037 |
cattggtgacttgcttgttttaaaccataagagatttcagtaatctgcaaacttgaataggatttgaggaagtcacaccaagaggaagctttatataaac |
42778136 |
T |
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| Q |
546 |
ctcttcattattgttgtgtgtatccctttgct |
577 |
Q |
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| T |
42778137 |
ctcttcattattgttgtgtgtatccctttgct |
42778168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 42777471 - 42777636
Alignment:
| Q |
1 |
ccttgatgaaaaagtcggtcaatagattcatataggtggtagtaagaagatggacaaaaatgtgtgcaacttctcacgaactatgtgacaaccaacgcca |
100 |
Q |
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| T |
42777471 |
ccttgatgaaaaagtcggtcaatagattcatataggtgatagtaagaagatggaaaaaaatgtgtgtaacttctcacgaactatgtgacaaccaacgcca |
42777570 |
T |
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| Q |
101 |
atatgcttggtgcgctcatgaaatgttggatccaaagcaatgtgtttgtcagataaaatatctaaa |
166 |
Q |
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| T |
42777571 |
atatgcttggtgcgctcatgaaatgtaggatccaaagcaatgtgtttgtcagataaaatatctaaa |
42777636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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