View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11652_high_4 (Length: 484)

Name: NF11652_high_4
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11652_high_4
NF11652_high_4
[»] chr1 (7 HSPs)
chr1 (230-468)||(13134528-13134766)
chr1 (271-463)||(25264408-25264599)
chr1 (263-329)||(34481389-34481455)
chr1 (267-324)||(27117322-27117379)
chr1 (275-371)||(34103855-34103951)
chr1 (264-329)||(15299451-15299516)
chr1 (254-302)||(25534293-25534341)
[»] chr5 (10 HSPs)
chr5 (18-199)||(22066937-22067118)
chr5 (18-199)||(19023038-19023219)
chr5 (241-435)||(17337279-17337473)
chr5 (281-467)||(27920862-27921049)
chr5 (261-323)||(23031541-23031603)
chr5 (263-329)||(22871116-22871182)
chr5 (281-467)||(32416832-32417011)
chr5 (374-460)||(20533484-20533570)
chr5 (269-311)||(26252267-26252309)
chr5 (269-329)||(19762856-19762916)
[»] chr7 (20 HSPs)
chr7 (18-199)||(4487448-4487629)
chr7 (231-447)||(9890699-9890916)
chr7 (277-460)||(26134205-26134388)
chr7 (271-463)||(2504687-2504880)
chr7 (260-323)||(23588049-23588112)
chr7 (243-329)||(5530504-5530590)
chr7 (335-442)||(21227859-21227966)
chr7 (368-434)||(4901383-4901449)
chr7 (368-460)||(9612883-9612975)
chr7 (368-460)||(9840454-9840546)
chr7 (274-322)||(21101897-21101945)
chr7 (262-325)||(1728012-1728075)
chr7 (278-325)||(8157881-8157928)
chr7 (388-446)||(20175166-20175224)
chr7 (263-329)||(21232917-21232983)
chr7 (348-417)||(5530623-5530691)
chr7 (261-325)||(1731463-1731527)
chr7 (263-307)||(13707926-13707970)
chr7 (263-327)||(21501714-21501777)
chr7 (269-329)||(31493371-31493431)
[»] chr8 (8 HSPs)
chr8 (34-199)||(22621256-22621421)
chr8 (368-444)||(24119177-24119253)
chr8 (269-325)||(26614849-26614905)
chr8 (270-329)||(17977062-17977121)
chr8 (368-451)||(26008666-26008749)
chr8 (259-328)||(5855537-5855605)
chr8 (269-326)||(24905082-24905139)
chr8 (246-295)||(28317844-28317893)
[»] chr3 (11 HSPs)
chr3 (239-420)||(25757144-25757325)
chr3 (271-467)||(20339275-20339467)
chr3 (243-329)||(20398046-20398132)
chr3 (272-324)||(21083703-21083755)
chr3 (263-329)||(8144062-8144128)
chr3 (263-310)||(27854136-27854183)
chr3 (269-329)||(821105-821165)
chr3 (269-324)||(28729199-28729254)
chr3 (243-307)||(21825432-21825497)
chr3 (289-333)||(13907838-13907882)
chr3 (335-383)||(26335726-26335774)
[»] chr4 (6 HSPs)
chr4 (273-451)||(7612645-7612824)
chr4 (243-329)||(30600325-30600411)
chr4 (390-462)||(17661040-17661112)
chr4 (269-324)||(22526725-22526780)
chr4 (269-329)||(9264597-9264657)
chr4 (270-302)||(12462192-12462224)
[»] chr2 (11 HSPs)
chr2 (349-467)||(8446519-8446637)
chr2 (271-469)||(29883681-29883879)
chr2 (267-329)||(27419818-27419880)
chr2 (30-171)||(43254850-43254995)
chr2 (269-329)||(27418674-27418734)
chr2 (388-463)||(12557128-12557203)
chr2 (269-329)||(25939585-25939645)
chr2 (368-460)||(27870299-27870391)
chr2 (263-307)||(45553577-45553621)
chr2 (263-329)||(26291518-26291584)
chr2 (264-329)||(21078209-21078274)
[»] chr6 (7 HSPs)
chr6 (273-456)||(33655359-33655542)
chr6 (368-446)||(10504186-10504264)
chr6 (269-329)||(9726459-9726519)
chr6 (273-340)||(20404276-20404343)
chr6 (368-437)||(34479132-34479201)
chr6 (269-329)||(14725865-14725925)
chr6 (271-467)||(26214856-26215050)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 8e-99; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 230 - 468
Target Start/End: Complemental strand, 13134766 - 13134528
Alignment:
Q  230 aatatgattcatacaccttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13134766 aatatgattcgtacaccttcgtaaggaatatttgtgcgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 13134667  T
Q  330 tggtgctaaaggttcactcatctatgaatgatagatgtacatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttacttta 429  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||| | |||||    
T  13134666 tggtgctaaaggttcactcatctatgaatcttagatgtacatcaacatactctccctatcggtagttctacaaatgggcaaccctatctcgtcttcttta 13134567  T
Q  430 ccaaggataaaagaagagtaaaattattatgctagttca 468  Q
    |||||||| |||||||| ||||| |||||||||||||||    
T  13134566 ccaaggatgaaagaagaataaaactattatgctagttca 13134528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 463
Target Start/End: Original strand, 25264408 - 25264599
Alignment:
Q  271 tcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtaca 370  Q
    |||||||||| || ||||| ||||| || | ||||||||| | || ||||||||  |||||||  ||||||||| | | |||||||||  |||| || ||    
T  25264408 tcttactctcccaaaggtatttgaaacaaagacttaaattagggtacttaaattctcaatggtcttaaaggttc-cacgtctatgaatattagaagttca 25264506  T
Q  371 tcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgcta 463  Q
    ||||||||||||| |  |||||||||||| |||| |||| ||||||||||| ||| ||| |||||||  ||||||| |||| |||||||||||    
T  25264507 tcaacatactctcactttcggtagttctacaaacaggcaaccctatctcgtctaccttatcaaggatgtaagaagaataaagttattatgcta 25264599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 34481389 - 34481455
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    ||||| |||||||||||||||  |||||||||| ||||||||||| || | |||| |||||||||||    
T  34481389 gtgtggggtcttactctctcacgggtaattgaaacataaacttaagttggcgttcctaaatttccaa 34481455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 27117379 - 27117322
Alignment:
Q  267 gaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatt 324  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||| |  ||||||||||    
T  27117379 gaggtcttattctctcagaggtaattgaaacatagacttaaattggctttcttaaatt 27117322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 371
Target Start/End: Original strand, 34103855 - 34103951
Alignment:
Q  275 actctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtacat 371  Q
    ||||||| |||||||||||||  ||||||||||||| || ||||||||||  |||| ||  ||||||||  ||||| |||||||  |||| ||||||    
T  34103855 actctctaagaggtaattgaaagataaacttaaattagaattcttaaattctcaattgtcataaaggttttctcatatatgaatcttagaagtacat 34103951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 15299451 - 15299516
Alignment:
Q  264 tgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||| |||||||||| ||||  | |||||| | |||||||||||||| |||||| |||||||||||    
T  15299451 tgtggggtcttactccctcaaggataattggaacataaacttaaattagagttcctaaatttccaa 15299516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 25534341 - 25534293
Alignment:
Q  254 ggaatattagtgtgaggtcttactctctcagaggtaattgaagcataaa 302  Q
    ||||| |||| ||| |||||||||||||||||| |||||||| ||||||    
T  25534341 ggaatgttagagtggggtcttactctctcagagataattgaaacataaa 25534293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 22066937 - 22067118
Alignment:
Q  18 taatcaaacaacaccaaaatcaaaacaagttttgaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22066937 taatcaaacaacaccaaaatcaaaacaagttttgaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatg 22067036  T
Q  118 gttcaaaaccagcttaactaattcaccaaaacaaatccagtttttgtataaaaccggctggttcagttttgacatacaaacc 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22067037 gttcaaaacaagcttaactaattcaccaaaacaaatccagtttttgtataaaaccggctggttcagttttgacatacaaacc 22067118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 19023038 - 19023219
Alignment:
Q  18 taatcaaacaacaccaaaatcaaaacaagttttgaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatg 117  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19023038 taatcaaacaacaccaaaatcaaaacaagttttgaataaaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatg 19023137  T
Q  118 gttcaaaaccagcttaactaattcaccaaaacaaatccagtttttgtataaaaccggctggttcagttttgacatacaaacc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19023138 gttcaaaaccagcttaactaattcaccaaaacaaatccagtttttgtataaaaccggctggttcagttttgacatacaaacc 19023219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 435
Target Start/End: Complemental strand, 17337473 - 17337279
Alignment:
Q  241 tacaccttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaag 340  Q
    ||||||||| |||||||||||| ||||||||| |||||| | |||| ||||||||||||| ||||||||| |||||| ||||||||||||||| ||||||    
T  17337473 tacaccttcataaggaatattaatgtgaggtcgtactcttttagagttaattgaagcatatacttaaattagagttcctaaatttccaatggtcctaaag 17337374  T
Q  341 gttcactcatctatgaatgatagatgtacatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaagg 435  Q
    |||| ||||||||| |||  |||| |||||||||||||||| |||  |||||||||||| |||||| || || |||||||| ||| |||| ||||    
T  17337373 gttccctcatctatcaatcttagaagtacatcaacatactccccctctcggtagttctacaaacggacaaccttatctcgtctaccttacgaagg 17337279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 281 - 467
Target Start/End: Complemental strand, 27921049 - 27920862
Alignment:
Q  281 tcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtacatcaacatact 380  Q
    |||||| |||||||||| || | ||||| | |||||||||||||| ||||||| |||||||||| |||||||||||||  |||| |||||||| |||| |    
T  27921049 tcagagctaattgaagcttagatttaaactagagttcttaaattttcaatggtcctaaaggttccctcatctatgaatcttagaagtacatcagcatatt 27920950  T
Q  381 ctccccatcggtagttctagaaacgggcacccctatctcgtttacttta-ccaaggataaaagaagagtaaaattattatgctagttc 467  Q
    |||||  || | ||||||| ||||||||| ||||||||| | ||| ||| ||||||||  ||||||||||||||||||||| ||||||    
T  27920949 ctccctctcagcagttctacaaacgggcagccctatctcatctaccttacccaaggatgtaagaagagtaaaattattatgttagttc 27920862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 23031541 - 23031603
Alignment:
Q  261 tagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaat 323  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||    
T  23031541 tagtgtggggtcttactctttcagaggtaattgaagcatatacttaaattagagttcataaat 23031603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 22871116 - 22871182
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    ||||| |||||||||| ||||| |||||||||| ||||||||||| || | |||| |||||||||||    
T  22871116 gtgtggggtcttactccctcaggggtaattgaaacataaacttaagttggcgttcctaaatttccaa 22871182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 467
Target Start/End: Complemental strand, 32417011 - 32416832
Alignment:
Q  281 tcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtacatcaacatact 380  Q
    |||||||||||||||||||| | ||||||| |||||| ||||||  ||||||| |||||   || |||||||||||||  |||| ||| ||||||||| |    
T  32417011 tcagaggtaattgaagcatatatttaaattagagttcctaaattctcaatggtcctaaa--ctc-ctcatctatgaatcttagaagtatatcaacatatt 32416915  T
Q  381 ctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgctagttc 467  Q
    |||||  ||| || ||||| |||||  || |  ||||| || ||| ||||||| |||  ||||||||||    ||||||||||||||    
T  32416914 ctccctctcgataattctacaaacgaacaactatatcttgtctaccttaccaatgatgtaagaagagta----tattatgctagttc 32416832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 460
Target Start/End: Complemental strand, 20533570 - 20533484
Alignment:
Q  374 acatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatg 460  Q
    ||||| ||||||  |||||||||||| ||| ||||| || |||||| | ||| |||||||||||  ||||||| |||| ||||||||    
T  20533570 acatattctccctctcggtagttctacaaatgggcaaccatatctcatctacattaccaaggatgtaagaagaataaagttattatg 20533484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 26252267 - 26252309
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaattt 311  Q
    |||||||||||||||||||||||| || ||||||||| |||||    
T  26252267 ggtcttactctctcagaggtaattcaaacataaacttgaattt 26252309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 19762916 - 19762856
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| || || |||||| ||| |||||||  ||||| ||||||||||||||||||    
T  19762916 ggtcttactcgcttaggggtaatcgaaacataaacacaaattagagttcttaaatttccaa 19762856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 4487448 - 4487629
Alignment:
Q  18 taatcaaacaacaccaaaatcaaaacaagttttgaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatg 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487448 taatcaaacaacaccaaaataaaaacaagttttgaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatg 4487547  T
Q  118 gttcaaaaccagcttaactaattcaccaaaacaaatccagtttttgtataaaaccggctggttcagttttgacatacaaacc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4487548 gttcaaaaccagcttaactaattcaccaaaacaaatccagtttttgtataaaaccaggtggttcagttttgacatacaaacc 4487629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 231 - 447
Target Start/End: Original strand, 9890699 - 9890916
Alignment:
Q  231 atatgattcatacaccttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaagcat-aaacttaaatttgagttcttaaatttccaa 329  Q
    ||||||||  ||||||||||||||||||||||   |||||||||||||||| ||||||||||||| ||| |||||| |||| | |||| || ||||||||    
T  9890699 atatgatttgtacaccttcgtaaggaatattataatgaggtcttactctcttagaggtaattgaaacataaaacttgaattagcgttcatacatttccaa 9890798  T
Q  330 tggtgctaaaggttcactcatctatgaatgatagatgtacatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttacttta 429  Q
    ||||  ||||||||| || ||| ||||||  |||| |||||||||||||||||| |  ||| |||||||| |||| | |  |||| |||||| ||| |||    
T  9890799 tggtcataaaggttccctgatcaatgaatcttagaagtacatcaacatactctcactctcgatagttctaaaaactgacttccctttctcgtctacctta 9890898  T
Q  430 ccaaggataaaagaagag 447  Q
    ||||||||  ||||||||    
T  9890899 ccaaggatggaagaagag 9890916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 460
Target Start/End: Complemental strand, 26134388 - 26134205
Alignment:
Q  277 tctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtacatcaaca 376  Q
    |||||||||||||||||||| ||| | ||||||   ||||||||||||  ||||||| ||||| |||||||| |||||||||  |||| ||| | || ||    
T  26134388 tctctcagaggtaattgaagtatatatttaaataaaagttcttaaattctcaatggtcctaaaagttcactcttctatgaatcttagaagtatagcatca 26134289  T
Q  377 tactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatg 460  Q
    |||||||||  |||||||||||| |||||| || || |||||||| ||| ||||||||||| || ||||||||| |||||||||    
T  26134288 tactctccctctcggtagttctacaaacggacaaccatatctcgtctaccttaccaaggatgaacgaagagtaagattattatg 26134205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 463
Target Start/End: Original strand, 2504687 - 2504880
Alignment:
Q  271 tcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtaca 370  Q
    |||||| |||||| |||||||| || || | ||||||||| | |||| ||||||  ||| ||| |||||||||| ||| |||||||||| |||| || ||    
T  2504687 tcttaccctctcaaaggtaattaaaacaaagacttaaattagggttcataaattctcaacggtcctaaaggttctctcgtctatgaatgttagaagttca 2504786  T
Q  371 tca-acatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgcta 463  Q
    ||  ||||||||||||  |||||||||||| ||| ||| | || |||||||| ||| ||||||||||| |||||||| |||| |||||||||||    
T  2504787 tcttacatactctccctctcggtagttctacaaatgggaaaccatatctcgtctaccttaccaaggatgaaagaagaataaagttattatgcta 2504880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 23588049 - 23588112
Alignment:
Q  260 ttagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaat 323  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  23588049 ttagtgtgggatcttactctctcagaggtaattgaagtataaacttaaattagagttcctaaat 23588112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 329
Target Start/End: Original strand, 5530504 - 5530590
Alignment:
Q  243 caccttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    ||||||||||| || |||||||||| |||||||||| || || ||||||| || |||||||||||||| | |||| |||||||||||    
T  5530504 caccttcgtaatgattattagtgtggggtcttactcgcttaggggtaattaaaacataaacttaaattggcgttcctaaatttccaa 5530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 21227859 - 21227966
Alignment:
Q  335 ctaaaggttcactcatctatgaatgatagatgtacatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaag 434  Q
    |||||||||| ||||||||| |||  |||| |||||||| |||||||| ||  | |||||||||| |||| |||| |||||||| || ||  ||||||||    
T  21227859 ctaaaggttccctcatctattaatcttagaagtacatcagcatactcttcctcttggtagttctacaaacaggcaaccctatcttgtctatcttaccaag 21227958  T
Q  435 gataaaag 442  Q
    ||||||||    
T  21227959 gataaaag 21227966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 434
Target Start/End: Complemental strand, 4901449 - 4901383
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaag 434  Q
    ||||||||| ||||||||  |||||||||||| ||| ||||| ||||||||||| ||| ||||||||    
T  4901449 acatcaacaaactctccctctcggtagttctacaaatgggcatccctatctcgtctaccttaccaag 4901383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 9612975 - 9612883
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatg 460  Q
    ||||||||||| ||||||  ||||||||| || ||||| ||  ||| ||||||||||| ||||||||| | |||||||| |||| ||| ||||    
T  9612975 acatcaacatattctccctctcggtagttttacaaacgtgccgccccatctcgtttaccttaccaaggttgaaagaagaataaagttactatg 9612883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 9840546 - 9840454
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatg 460  Q
    ||||||||||| ||||||  ||||||||| || ||||| ||  ||| ||||||||||| ||||||||| | |||||||| |||| ||| ||||    
T  9840546 acatcaacatattctccctctcggtagttttacaaacgtgccgccccatctcgtttaccttaccaaggttgaaagaagaataaagttactatg 9840454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 21101945 - 21101897
Alignment:
Q  274 tactctctcagaggtaattgaagcataaacttaaatttgagttcttaaa 322  Q
    |||||||| |||||||||||||||||| |||||||||  ||||||||||    
T  21101945 tactctcttagaggtaattgaagcatagacttaaattatagttcttaaa 21101897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 1728012 - 1728075
Alignment:
Q  262 agtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaattt 325  Q
    |||||| |||||| |||||| ||| |||||||||||||| ||| ||||| |||||| |||||||    
T  1728012 agtgtggggtcttgctctcttagaagtaattgaagcatatactaaaattagagttcctaaattt 1728075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 8157881 - 8157928
Alignment:
Q  278 ctctcagaggtaattgaagcataaacttaaatttgagttcttaaattt 325  Q
    |||||||||||||||||| |||| ||||||||| || |||||||||||    
T  8157881 ctctcagaggtaattgaaacatagacttaaattagaattcttaaattt 8157928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 20175166 - 20175224
Alignment:
Q  388 tcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaaga 446  Q
    |||||||||||| |||||| || ||| ||||||| ||| ||||||||||| ||||||||    
T  20175166 tcggtagttctacaaacggacaaccccatctcgtctaccttaccaaggatgaaagaaga 20175224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 21232917 - 21232983
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    ||||| ||| |||||| ||||| |||||||||| |||| ||||||||| | |||| |||||||||||    
T  21232917 gtgtggggtattactccctcagtggtaattgaaacatagacttaaattagtgttcctaaatttccaa 21232983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 5530623 - 5530691
Alignment:
Q  348 catctatgaatgatagatgtacatcaacatactctccccatcggtagttctagaaacgggcacccctatc 417  Q
    |||||||||||  || |||||||| |||| ||||||||  |||||||||||| ||| |||||||||||||    
T  5530623 catctatgaatcttatatgtacat-aacacactctccctctcggtagttctacaaatgggcacccctatc 5530691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 1731463 - 1731527
Alignment:
Q  261 tagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaattt 325  Q
    ||||||| | |||| |||||||| |||||||||||||| | ||||| ||| |||||| |||||||    
T  1731463 tagtgtgggatctttctctctcaaaggtaattgaagcaaatacttagattagagttcctaaattt 1731527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 13707926 - 13707970
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaa 307  Q
    ||||| ||||||||| ||| ||||||||||||| |||||||||||    
T  13707926 gtgtggggtcttactgtcttagaggtaattgaaacataaacttaa 13707970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 21501714 - 21501777
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttcc 327  Q
    ||||| |||||||||| ||||| |||||||||| ||||||||||||||   |||| |||||||||    
T  21501714 gtgtggggtcttactccctcag-ggtaattgaaacataaacttaaattgacgttcctaaatttcc 21501777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 31493371 - 31493431
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| |||| ||||||||||| |||| |||||| || |||||  |||||||||||    
T  31493371 ggtcttactccctcaaaggtaattgaaacatagacttaagttggagtttctaaatttccaa 31493431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 22621256 - 22621421
Alignment:
Q  34 aaatcaaaacaagttttgaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaaccagctta 133  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  22621256 aaatcaaaacaagtttttaatggaagattcatacattgactacaaccaaaaccaaaagttgagactggttcaatacatgcaatggttcaaaaccaactta 22621355  T
Q  134 actaattcaccaaaacaaatccagtttttgtataaaaccggctggttcagttttgacatacaaacc 199  Q
    |||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22621356 actaatacacaaaaagaaatccagtttttgtataaaaccagctggttcagttttgacatacaaacc 22621421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 24119253 - 24119177
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaa 444  Q
    ||||||||| ||||||||  ||  |||||||| ||||||||| ||||||||||| ||| |||||| |||| ||||||    
T  24119253 acatcaacacactctccctctctatagttctacaaacgggcaaccctatctcgtctaccttaccagggatgaaagaa 24119177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 26614905 - 26614849
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaattt 325  Q
    ||||||||||||| | | |||||||||||||| ||||||||| |||||| |||||||    
T  26614905 ggtcttactctcttaaaagtaattgaagcatatacttaaattagagttcctaaattt 26614849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 17977062 - 17977121
Alignment:
Q  270 gtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||  |||| |||||||||| |||||||||||||| || ||| |||||||||||    
T  17977062 gtcttactccatcaggggtaattgaaacataaacttaaattggatttcctaaatttccaa 17977121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 26008666 - 26008749
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaa 451  Q
    ||||||||||| |||||   |||||||||||| ||| | ||| ||||||||||| ||| |||| |||||| |||||||| ||||    
T  26008666 acatcaacatattctccttgtcggtagttctacaaatgagcatccctatctcgtgtaccttactaaggatgaaagaagaataaa 26008749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 5855537 - 5855605
Alignment:
Q  259 attagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttcca 328  Q
    ||||||||| ||| ||||||||||||||||||||||| || ||| ||||||| |  ||| ||||||||||    
T  5855537 attagtgtg-ggttttactctctcagaggtaattgaaacagaaatttaaattggctttcctaaatttcca 5855605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 24905082 - 24905139
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttc 326  Q
    |||||||||| || || |||||||||| |||||||||||||| || ||| ||||||||    
T  24905082 ggtcttactcccttaggggtaattgaaacataaacttaaattagaattcctaaatttc 24905139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 28317844 - 28317893
Alignment:
Q  246 cttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaa 295  Q
    ||||||||| | |||||||||| |||||| ||||||||||||||| ||||    
T  28317844 cttcgtaagaattattagtgtggggtctttctctctcagaggtaagtgaa 28317893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 239 - 420
Target Start/End: Original strand, 25757144 - 25757325
Alignment:
Q  239 catacaccttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaa 338  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |  ||||||||||||||| | | | ||    
T  25757144 catacaccttcataaggaatattagtgtgaggtcttactctctcagaggtaattgaaacatagacttaaattagcattcttaaatttccaacgattccaa 25757243  T
Q  339 aggttcactcatctatgaatgatagatgtacatcaacatactctccccatcggtagttctagaaacgggcacccctatctcg 420  Q
     ||||| ||||||| ||||| ||||||||||||||||||||||| ||  ||| || ||||| ||||||||| || |||||||    
T  25757244 tggttctctcatctctgaatcatagatgtacatcaacatactcttcctctcgatatttctacaaacgggcatccatatctcg 25757325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 467
Target Start/End: Complemental strand, 20339467 - 20339275
Alignment:
Q  271 tcttactctctcagaggtaattgaagcataaacttaa--atttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgta 368  Q
    ||||||| |||||||| ||||| ||||||||||||||  ||| |||||| ||||||  ||||||| ||||||||||  || |||||||||  |||| ||     
T  20339467 tcttactatctcagagttaattaaagcataaacttaaatattagagttcctaaattctcaatggtcctaaaggttccgtcgtctatgaatcgtagaagtt 20339368  T
Q  369 catcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgctagttc 467  Q
    ||||||||||||| |||      |||||||| ||||||||| || ||| |||| ||| |||||||| ||  ||||||||||||||||||||||||||||    
T  20339367 catcaacatactccccc------tagttctacaaacgggcatccatatatcgtctaccttaccaagaatgtaagaagagtaaaattattatgctagttc 20339275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 243 - 329
Target Start/End: Original strand, 20398046 - 20398132
Alignment:
Q  243 caccttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||| ||||||||| |||||| |||||||||||    
T  20398046 caccttcgtaaggattattagtgtggggtcttactcgctcagaggtaattgaaacatatacttaaattagagttcctaaatttccaa 20398132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 21083703 - 21083755
Alignment:
Q  272 cttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatt 324  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  21083703 cttactctctcagaggtaattgaagcataaacttaaattagagttcctaaatt 21083755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 8144062 - 8144128
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||||| || ||| |||||||||||    
T  8144062 gtgtgaggtcttactctctcaaaggtaattgaaacatagacttaaattggaattcctaaatttccaa 8144128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 27854183 - 27854136
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatt 310  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  27854183 gtgtggggttttactctctcagaggtaattgaaacataaacttaaatt 27854136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 821165 - 821105
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| || ||  ||||||||| |||||||||||||| |||||| |||||||||||    
T  821165 ggtcttactcgcttaggagtaattgaaacataaacttaaattagagttcgtaaatttccaa 821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 28729199 - 28729254
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatt 324  Q
    ||||||||||||||||||||||||||| |||| |||| |||| | |||| ||||||    
T  28729199 ggtcttactctctcagaggtaattgaaacatagacttgaattagcgttcctaaatt 28729254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 21825497 - 21825432
Alignment:
Q  243 caccttcgtaaggaatattagtgtgagg-tcttactctctcagaggtaattgaagcataaacttaa 307  Q
    |||||||||||||| | |||||||| || |||||||| |||| ||||||||||| |||| ||||||    
T  21825497 caccttcgtaaggatttttagtgtgggggtcttactccctcaaaggtaattgaaacatagacttaa 21825432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 13907882 - 13907838
Alignment:
Q  289 aattgaagcataaacttaaatttgagttcttaaatttccaatggt 333  Q
    ||||||| |||||||||||||| |||||| ||||| |||||||||    
T  13907882 aattgaaacataaacttaaattggagttcctaaatatccaatggt 13907838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 26335726 - 26335774
Alignment:
Q  335 ctaaaggttcactcatctatgaatgatagatgtacatcaacatactctc 383  Q
    ||||||||||  ||||||||||||  |||| ||||||||||||||||||    
T  26335726 ctaaaggttccatcatctatgaatcttagaagtacatcaacatactctc 26335774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 451
Target Start/End: Original strand, 7612645 - 7612824
Alignment:
Q  273 ttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtacatc 372  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| |||||||||| || ||||||||||  |||| |||||||    
T  7612645 ttactctctcagaggtaattaaagcataaacttaaattagagttcctaaatttccaatggtcctaaaggttcccttatctatgaatcttagaagtacatc 7612744  T
Q  373 aacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggat-aaaagaagagtaaa 451  Q
    |||||| |||||   ||| |||||||| ||||||||| | || |||||| ||| ||| ||||||| ||||||||||||||    
T  7612745 aacatattctccatctcgatagttctacaaacgggcagctctgtctcgtctaccttatcaaggatgaaaagaagagtaaa 7612824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 329
Target Start/End: Original strand, 30600325 - 30600411
Alignment:
Q  243 caccttcgtaaggaatattagtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||||||| |||||| ||| |||||||| |  |||| |||||||||| |||| |||||| || | |||| |||||||||||    
T  30600325 caccttcgtaaggattattagcgtggggtcttacgcgatcaggggtaattgaaacatagacttaagttggcgttcctaaatttccaa 30600411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 17661040 - 17661112
Alignment:
Q  390 ggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgct 462  Q
    |||| ||||| |||||||||  |||||||||| ||  |||||||||||||||||||| |||| ||| ||||||    
T  17661040 ggtatttctacaaacgggcagtcctatctcgtctatcttaccaaggataaaagaagaataaagttactatgct 17661112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 22526725 - 22526780
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatt 324  Q
    ||||||||||||| ||||||||||||| |||| ||||||||| | |||| ||||||    
T  22526725 ggtcttactctcttagaggtaattgaaacatacacttaaattagcgttcctaaatt 22526780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 9264657 - 9264597
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| ||||| | |||||||| |||| ||||||||| | |||| |||||||||||    
T  9264657 ggtcttactccctcagtgttaattgaaacatatacttaaattggcgttcctaaatttccaa 9264597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 12462224 - 12462192
Alignment:
Q  270 gtcttactctctcagaggtaattgaagcataaa 302  Q
    |||||||||||||||||||||||||| ||||||    
T  12462224 gtcttactctctcagaggtaattgaaacataaa 12462192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 467
Target Start/End: Complemental strand, 8446637 - 8446519
Alignment:
Q  349 atctatgaatgatagatgtacatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagt 448  Q
    ||||||||||  |||  |||||||||||||||||| |  |||||||||||| |||||| || ||||||||||| ||  ||||||| |||  |||||||||    
T  8446637 atctatgaatcttaggagtacatcaacatactctctctttcggtagttctacaaacggacaaccctatctcgtctatcttaccaatgatgtaagaagagt 8446538  T
Q  449 aaaattattatgctagttc 467  Q
    |||||||||||||||||||    
T  8446537 aaaattattatgctagttc 8446519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 469
Target Start/End: Original strand, 29883681 - 29883879
Alignment:
Q  271 tcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtaca 370  Q
    ||||||||||||| ||||||||||| || ||| ||||| | |||||| ||||||| | ||||| ||||||||||  ||||||||||||  |||| || ||    
T  29883681 tcttactctctcaaaggtaattgaaacacaaatttaaagtagagttcctaaattttccatggtcctaaaggttccatcatctatgaatcttagaagttca 29883780  T
Q  371 tcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgctagttcat 469  Q
    | |||||| |||| |  |||||| || || ||  |||||  ||| | |||| ||| |||||||||||  ||||||||| |||||| |||| || |||||    
T  29883781 ttaacataatctctctctcggtaattttacaattgggcagacctgtgtcgtctaccttaccaaggatgtaagaagagtgaaattaatatgttatttcat 29883879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 27419818 - 27419880
Alignment:
Q  267 gaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||||| | ||| |||||||||| |||||||||||||| |||||| |||||||||||    
T  27419818 gaggtcttactcgcacaggggtaattgaaacataaacttaaattagagttcctaaatttccaa 27419880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 43254850 - 43254995
Alignment:
Q  30 accaaaatcaaaacaagttttgaatggaagat---tcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaac 126  Q
    ||||||||||||||||||||||||| ||||||   ||||| |||||||  |||||||||| ||| ||||||||||||  |||||| || | | |||||||    
T  43254850 accaaaatcaaaacaagttttgaatcgaagattcatcatatattgacttaaaccaaaacc-aaatttgagactggttctatacatacactagctcaaaac 43254948  T
Q  127 cag--cttaactaattcaccaaaacaaatccagtttttgtataaaac 171  Q
    |||  |  ||| |||||||||| | ||||||||| ||| ||| ||||    
T  43254949 cagtccaaaaccaattcaccaatataaatccagtatttttatcaaac 43254995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 27418674 - 27418734
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| | ||| |||||||||| |||||||||||||| |||||| |||||||||||    
T  27418674 ggtcttactcgcacaggggtaattgaaacataaacttaaattagagttcctaaatttccaa 27418734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 12557203 - 12557128
Alignment:
Q  388 tcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgcta 463  Q
    |||||||||||| |||| ||||  |||||||||| ||| ||||||||||| ||| |||| |||| |||||||||||    
T  12557203 tcggtagttctacaaaccggcagtcctatctcgtataccttaccaaggatgaaacaagaataaagttattatgcta 12557128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 25939585 - 25939645
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| |||| ||||||||||| |||||||||||||| |  ||| |||||||||||    
T  25939585 ggtcttactcactcaaaggtaattgaaacataaacttaaattagcattcctaaatttccaa 25939645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 27870299 - 27870391
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatg 460  Q
    ||||||||||| ||||||  ||| |||||||| ||| ||||| || |||||||| ||| |||||||| || |||||||| |||| ||| ||||    
T  27870299 acatcaacatattctccctctcgttagttctacaaaggggcagccatatctcgtctaccttaccaagaatgaaagaagaataaagttactatg 27870391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 45553577 - 45553621
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaa 307  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||    
T  45553577 gtgtgtggtcttactccctcagaggtaattgaaacataaacttaa 45553621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 26291518 - 26291584
Alignment:
Q  263 gtgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    ||||| |||||||||  || || ||||||| || |||||||||||||| |||||| |||||||||||    
T  26291518 gtgtggggtcttactaccttaggggtaattaaaacataaacttaaattagagttcctaaatttccaa 26291584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 21078274 - 21078209
Alignment:
Q  264 tgtgaggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||| |||||||||| ||  | |||||||||| ||||||||||| |||| |||| |||||||||||    
T  21078274 tgtggggtcttactccctttggggtaattgaaacataaacttaagtttgtgttcctaaatttccaa 21078209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 33655542 - 33655359
Alignment:
Q  273 ttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtacatc 372  Q
    ||||||||||| ||||||||||| |  |||||||| || || ||| ||||||  ||||||| |||||| || |||| |||||||||  |||| || ||||    
T  33655542 ttactctctcataggtaattgaaacgcaaacttaagttagaattcctaaattctcaatggtcctaaagattgactcgtctatgaatcttagaagttcatc 33655443  T
Q  373 aacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattat 456  Q
    |||||||||| ||  |||||||||||| |||  |||| || |||||||  ||| ||| ||| |||| |||||||||||| ||||    
T  33655442 aacatactcttcctctcggtagttctacaaaatggcaaccatatctcgactaccttagcaaagatataagaagagtaaagttat 33655359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 10504186 - 10504264
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaaga 446  Q
    ||||||||| ||||||||  |||||||||||| ||| ||||| ||||||||||| ||| ||||||| ||| ||||||||    
T  10504186 acatcaacacactctccctctcggtagttctacaaaggggcaaccctatctcgtctaccttaccaatgatgaaagaaga 10504264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 9726459 - 9726519
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||||| || || |||||||||| |||||||||||||| |||||| |||||||||||    
T  9726459 ggtcttactcgcttaggggtaattgaaacataaacttaaattagagttcctaaatttccaa 9726519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 20404343 - 20404276
Alignment:
Q  273 ttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaag 340  Q
    ||||||||||||||||||||||| || | ||||||||| |||||| ||||||  ||||||| ||||||    
T  20404343 ttactctctcagaggtaattgaaacaaagacttaaattagagttcctaaattctcaatggtcctaaag 20404276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 34479132 - 34479201
Alignment:
Q  368 acatcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggat 437  Q
    ||||||||||| |||| | || |||||||||| ||||||||| ||||||||||| ||| |||| ||||||    
T  34479132 acatcaacatattctcgctattggtagttctacaaacgggcagccctatctcgtctaccttacaaaggat 34479201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 14725865 - 14725925
Alignment:
Q  269 ggtcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaa 329  Q
    |||||||| | ||||| |||||||||| |||||||||||||| |||||| || ||||||||    
T  14725865 ggtcttacaccctcaggggtaattgaaacataaacttaaattagagttcctagatttccaa 14725925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 467
Target Start/End: Complemental strand, 26215050 - 26214856
Alignment:
Q  271 tcttactctctcagaggtaattgaagcataaacttaaatttgagttcttaaatttccaatggtgctaaaggttcactcatctatgaatgatagatgtaca 370  Q
    |||| ||| ||||||||||||| ||||||| | ||||||| |||||| ||| | || | ||||  |||| |||   || |||||||||  |||| |||||    
T  26215050 tcttgctccctcagaggtaattaaagcatagatttaaattagagttcctaattctcga-tggtcttaaatgttttttcgtctatgaattttagaagtaca 26214952  T
Q  371 tcaacatactctccccatcggtagttctagaaacgggcacccctatctcgtttactttaccaaggataaaagaagagtaaaattattatgctagttc 467  Q
    |||| ||| ||||||  ||||||||| || |||||| || ||||||||||| ||| |||||||| ||  ||| ||||| ||| ||| ||| ||||||    
T  26214951 tcaa-atagtctccctctcggtagttatacaaacggacaaccctatctcgtctaccttaccaagaatgtaagcagagttaaactatcatgttagttc 26214856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University