View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_high_6 (Length: 336)
Name: NF11652_high_6
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 31198180 - 31198497
Alignment:
| Q |
17 |
acacatattactcatgccttttaatttctattcaaataacgattagcattgccatcttctgattaattaattttaacaccctacaggaacatgatcaaag |
116 |
Q |
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| T |
31198180 |
acacatattactcatgccttttaatttctattcaaataacgattagcattgccatcttctgattaattaattttaacaccctacaggaacatgatcaaag |
31198279 |
T |
|
| Q |
117 |
tattactgcacaaattgagacactaaaaaacgatgtgaggaagatgcttgtcataaagaa---tgagaagtcacctgcaatagtccacttgattgattca |
213 |
Q |
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| T |
31198280 |
tattgctgcacaaattgagacactaaaaaacgatgtgaggaagatacttgatataaagaatattgagaagtcattggcaacagtccacttgattgattca |
31198379 |
T |
|
| Q |
214 |
atatgccgcttgggtgtgagttatcactttgaaaatgagattgaagaggttttgcaacatattcataaaaattatgttcaaaatggagaaataattagtt |
313 |
Q |
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| T |
31198380 |
atatgccgcttgggtgtgagttatcactttgaaaaggagattgaagaggttttgcaacatattcataagaattatgttcaaaatggagaaataattattt |
31198479 |
T |
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| Q |
314 |
tcgaaaacaacctttgct |
331 |
Q |
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|||||||||||||||||| |
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| T |
31198480 |
tcgaaaacaacctttgct |
31198497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 331
Target Start/End: Original strand, 31158896 - 31159129
Alignment:
| Q |
98 |
tacaggaacatgatcaaagtattactgcacaaattgagacactaaaaaacgatgtgaggaagatgcttgtcataaagaatgagaagtcacctgcaata-g |
196 |
Q |
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| T |
31158896 |
tacaggaagttgatcaaagtattgcagcacaaattgaaacgctaaaaaacaatgtgagggacatgcttgtctcaaacaccaagaa-tcccttggaaaaag |
31158994 |
T |
|
| Q |
197 |
tccacttgattgattcaatatgccgcttgggtgtgagttatcactttgaaaatgagattgaagaggttttgcaacatattcataaaaattatgttcaaaa |
296 |
Q |
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| T |
31158995 |
tgcacttaattgattcaatatgtcgtttgggtgtgagctatcattttgaaaatgagattgaagaggttttgcaacatattcataagaattatgttcaaaa |
31159094 |
T |
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| Q |
297 |
tggagaaataattagtttcgaaaacaacctttgct |
331 |
Q |
| |
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|||||||||||||| ||| ||| |||||||||||| |
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| T |
31159095 |
tggagaaataattatttttgaagacaacctttgct |
31159129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 308
Target Start/End: Complemental strand, 41352401 - 41352215
Alignment:
| Q |
124 |
gcacaaattgagacactaaaaaacgatgtgaggaagatgcttgtcataaagaatgagaagtcacctgcaatagtccacttgattgattcaatatgccgct |
223 |
Q |
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|||| ||||||||||||||||| |||||||| ||| |||||||| |||| ||||| | | |||| | |||||||||||||||||||||| || | |
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| T |
41352401 |
gcacgaattgagacactaaaaaccgatgtgaagaacatgcttgtttctaagactgagatgcccttggcaaaaatccacttgattgattcaatatgtcgtt |
41352302 |
T |
|
| Q |
224 |
tgggtgtgagttatcactttgaaaatgagattgaagaggttttgcaac--atattcataaaaattatgttcaaaatggagaaataat |
308 |
Q |
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| T |
41352301 |
tgggaataagctatcattttgaacatgagattgaagaggttttgctacatatattcacaataattatgttgaaaatggagaaataat |
41352215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 25832067 - 25832175
Alignment:
| Q |
201 |
cttgattgattcaatatgccgcttgggtgtgagttatcactttgaaaatgagattgaagaggttttgcaacatattcataaaaattatgttcaaaatgga |
300 |
Q |
| |
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|||||||||||||||||| || | ||||| |||||||| |||||||| |||||||| || ||||||||||||||||| || | | |||| |||||||| |
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| T |
25832067 |
cttgattgattcaatatgtcgtctcggtgttagttatcattttgaaaacgagattgacgaagttttgcaacatattcacaacagctgtgttgaaaatgga |
25832166 |
T |
|
| Q |
301 |
gaaataatt |
309 |
Q |
| |
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||||||||| |
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| T |
25832167 |
gaaataatt |
25832175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 95 - 331
Target Start/End: Original strand, 25791832 - 25792068
Alignment:
| Q |
95 |
ccctacaggaacatgatcaaagtattactgcacaaattgagacactaaaaaacgatgtgaggaagatgcttgtcataaagaatgagaagtcacctgcaat |
194 |
Q |
| |
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|||| ||||||| |||| ||| ||||| | ||||||||| || ||||||| ||| ||||| |||||||||||| ||||| |||||| | |||| |
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| T |
25791832 |
ccctgcaggaacttgatgaaaatattaaggtacaaattgaaaccctaaaaaccgacgtgagaaagatgcttgtctcaaagagtgagaaacccttggcaaa |
25791931 |
T |
|
| Q |
195 |
agtccacttgattgattcaatatgccgcttgggtgtgagttatcactttgaaaatgagattgaagaggttttgcaacatattcataaaaattatgttcaa |
294 |
Q |
| |
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||| || ||||||||||| |||||||| |||||| ||| ||||| |||||| |||||||||| ||| |||||||| ||||||| || |||||||||||| |
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| T |
25791932 |
agttcatttgattgattcgatatgccgtttgggtttgaactatcattttgaagatgagattgatgagattttgcaagatattcacaagaattatgttcaa |
25792031 |
T |
|
| Q |
295 |
aatggagaaataattagtttcgaaaacaacctttgct |
331 |
Q |
| |
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|||||||||||||||| ||| ||| |||||||||||| |
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| T |
25792032 |
aatggagaaataattacttttgaagacaacctttgct |
25792068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 14267803 - 14267700
Alignment:
| Q |
206 |
ttgattcaatatgccgcttgggtgtgagttatcactttgaaaatgagattgaagaggttttgcaacatattcataaaaattatgttcaaaatggagaaat |
305 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||| || ||||| || ||||||||||| |||| || | | |||| ||||||||||| | |
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| T |
14267803 |
ttgattcaatatgtcgtttgggtgtgagttatcactttgaaaaagaaattgatgatgttttgcaacaagttcacaagagctgtgttgaaaatggagaagt |
14267704 |
T |
|
| Q |
306 |
aatt |
309 |
Q |
| |
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|||| |
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| T |
14267703 |
aatt |
14267700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 2326159 - 2326266
Alignment:
| Q |
200 |
acttgattgattcaatatgccgcttgggtgtgagttatcactttgaaaatgagattgaagaggttttgcaacatattcataaaaattatgttcaaaatgg |
299 |
Q |
| |
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|||| |||||||| ||||| || ||||||||||| ||||| | |||||||||||||| || ||| ||||| | ||||| || | |||||| ||||||| |
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| T |
2326159 |
acttaattgattcgatatgtcgtttgggtgtgagctatcattacgaaaatgagattgatgaagttatgcaatacattcacaagagctatgttgaaaatgg |
2326258 |
T |
|
| Q |
300 |
agaaataa |
307 |
Q |
| |
|
|||||||| |
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|
| T |
2326259 |
agaaataa |
2326266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 17179144 - 17179276
Alignment:
| Q |
125 |
cacaaattgagacactaaaaaacgatgtgaggaagatgcttgtcataaagaatgagaagtcacctgcaatagtccacttgattgattcaatatgccgctt |
224 |
Q |
| |
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|||||||||| |||||||||| || |||||||| ||| ||||| ||||| |||||| | ||||| ||| || ||||||||||||||||| || || |
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|
| T |
17179144 |
cacaaattgaatcactaaaaaaggaagtgaggaacatgattgtctcaaagattgagaatccctttgcaaaagttcatttgattgattcaatatgtcgttt |
17179243 |
T |
|
| Q |
225 |
gggtgtgagttatcactttgaaaatgagattga |
257 |
Q |
| |
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|||||||| ||||| ||| || |||| ||||| |
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|
| T |
17179244 |
gggtgtgaactatcattttcaacatgaaattga |
17179276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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