View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_low_17 (Length: 222)
Name: NF11652_low_17
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 46688236 - 46688048
Alignment:
| Q |
16 |
atgaattgcttggccatgaacaagacagctctaggaaggactcggttgaaggtgaaaggaaacctgaagtttcgtctcaggatataaataaagttaattc |
115 |
Q |
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| T |
46688236 |
atgaattgcttggccatgaacaagacagctctaggaaggactcggttgaaggtgaaaggaaacctgaagtttcgtctcaggatataaataaagttaattc |
46688137 |
T |
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| Q |
116 |
aaatgaagaagctcctacagattcaactcatgcatggattggcacaagcgagctacctgatcctcaaatctcaattgatgatattaact |
204 |
Q |
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| T |
46688136 |
aaatgaagaagctcctacagattcaactcatgcatggattgacacaagcaagctacctgatcctcaaatctcaattgatgatattaact |
46688048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 46705266 - 46705189
Alignment:
| Q |
119 |
tgaagaagctcctacagattcaactcatgcatggattggcacaagcgagctacctgatcctcaaatctcaattgatga |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||| |||||| |
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| T |
46705266 |
tgaagaagctcctacagattcaactcatgcatggattgacacaagtcagctacatgatcctgaaatctcaagtgatga |
46705189 |
T |
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