View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_low_2 (Length: 579)
Name: NF11652_low_2
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 76 - 501
Target Start/End: Original strand, 12748595 - 12749020
Alignment:
| Q |
76 |
tattatttattagtaactaggcataagtatttatatacaaaactgtaacaaactttataacaaactagttatcttcggtttagttaaccaacaagtttac |
175 |
Q |
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| T |
12748595 |
tattatttattagtaactaggcataagtatttatatacaaaactgttacaaactttataacaaactagttatcttcggtttacttaaccaacaagtttac |
12748694 |
T |
|
| Q |
176 |
ccttgtttttcctcaacttctaactaactgaaaatataaactctaactaactgaatttattaaactcgtaatacacctcctaattcattagttagaggtt |
275 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
12748695 |
ccttgttttccctcaacttctaactaactcaaaatataaactctaactaactgaatttattaaactcctaatacacctcctaattcattatttagaggtt |
12748794 |
T |
|
| Q |
276 |
ttaaccatttataacttgtttctcaagtattcaaagatgttagtcttcaaaggctttgttaagtaagtttgcaacttgctcctctgtcttgcagtgctag |
375 |
Q |
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| T |
12748795 |
ttaaccatttataacttgtttctcaagtattcaaagttgttagtcttcaaaggctttggtaagtaagtttgcaacttgctcctctgtcttgcagtgctag |
12748894 |
T |
|
| Q |
376 |
atcttcagtttttcattaacagacctgctattaattagtaataccatcttctcttcttcttctagcttcatttctagcataagcatgttgatccattgtt |
475 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12748895 |
atcttcagtttgtcattaacagacctgctatcaattagtaattccatcttctcttcttcttctagcttcatttctagcataagcatgttgatccattgtt |
12748994 |
T |
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| Q |
476 |
cttgaaaagctactatagaagctgca |
501 |
Q |
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| T |
12748995 |
cttgaaaagctactatagaagctgca |
12749020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 12748176 - 12748237
Alignment:
| Q |
23 |
aacagaagaactgaaaaattaactttattaacttgagaatataatacttctcatattattta |
84 |
Q |
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| T |
12748176 |
aacagaagaactgaaaaataaactttattaacttgagaatataatacttcttatattattta |
12748237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 10992076 - 10991878
Alignment:
| Q |
43 |
aactttattaacttgagaatataatacttctcatattatttattagtaactaggcataagtatttatatac-aaaactgtaacaaactttataacaaact |
141 |
Q |
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| T |
10992076 |
aactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtatttatatacaaaaactgtaaaaaaaactattacaaact |
10991977 |
T |
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| Q |
142 |
agttatcttcggtttagttaaccaacaagtttacccttgtttttcctcaacttctaactaactgaaaatataaa--ctctaactaactgaatttattaaa |
239 |
Q |
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| T |
10991976 |
agttatcttaagtttacttaaccgacaagttaacccttgttttt-ctcgacttttaactaactcaaatgataaactctctaactaactgaatttattaaa |
10991878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 17342873 - 17342746
Alignment:
| Q |
244 |
taatacacctcctaattcattagttagaggttttaaccatttataacttgtttctcaagtattcaaagatgttagtcttcaaaggctttgttaagtaagt |
343 |
Q |
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|||||||||||||||||||||||||||| ||||| |||| || | | || |||||||| |||||| || || |||| || ||||||||| || |||| |
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| T |
17342873 |
taatacacctcctaattcattagttagaagtttttgacattcctagcctattcctcaagtactcaaagctgctaatctttaatggctttgtt-agcaagt |
17342775 |
T |
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| Q |
344 |
ttgcaacttgctcctctgtcttgcagtgc |
372 |
Q |
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| T |
17342774 |
ctacaacttgatcttctgtcttgcagtgc |
17342746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 372
Target Start/End: Original strand, 11352411 - 11352538
Alignment:
| Q |
244 |
taatacacctcctaattcattagttagaggttttaaccatttataacttgtttctcaagtattcaaagatgttagtcttcaaaggctttgttaagtaagt |
343 |
Q |
| |
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|||||||||||||||||||| || || || ||| |||||| |||| || |||||||| | |||| || || ||||||| ||||||| |||| |||| |
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| T |
11352411 |
taatacacctcctaattcatcaggtacagatttctaccattcccaactcattcctcaagtactgaaagctgctaatcttcaatggctttg-taagcaagt |
11352509 |
T |
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| Q |
344 |
ttgcaacttgctcctctgtcttgcagtgc |
372 |
Q |
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|||||||||||| |||||||| ||||| |
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| T |
11352510 |
ctgcaacttgctctcctgtcttgtagtgc |
11352538 |
T |
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