View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_low_5 (Length: 381)
Name: NF11652_low_5
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_low_5 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 25715 - 26054
Alignment:
| Q |
23 |
actacttttatgacttttaaattgaccaatatttgaagacaaaactatatttt-tgtatggacataaactatttgacaaaaaatacaatgcaaacaaagt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25715 |
actacttttatgacttttaaattgaccaatatttgaagacaaaactattttttttgtatggacattaactatttgacaaaaaatacaatgcaaacaaagt |
25814 |
T |
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| Q |
122 |
gtcataaaagaatctctaataagacccaccatagcaggtaacaccagaattgaaaattatatttccattcttatagcatgtaagactaattgccaatgaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25815 |
gtcataaaagaatctctaataagacccaccatagcaggtaacaccagaattgaaaattatatttccattcttataacatgtaagactaattgccaatgaa |
25914 |
T |
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| Q |
222 |
gaagcaagttgcaccaaattttctttgttcttcttccttcaactcagaatacatgttgctcaaccttctaatctgaaattaaacatttcaaatatcagta |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25915 |
gaagcaagttgcaccaaattttctttgttcttcttccttcagctcagaatacatgttgctcaaccttctaatctgaaattaaacatttcaaatatcaata |
26014 |
T |
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| Q |
322 |
atatatctatgttcaagttaactctgacaatacacaactt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26015 |
atatatctatgttcaagttaactctgacaatacacaactt |
26054 |
T |
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