View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_low_7 (Length: 330)
Name: NF11652_low_7
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 1513020 - 1512711
Alignment:
| Q |
17 |
attatatgatcgaaaatttatagcatgttgttataataaaaaatgtttgatgtttcgtataatatttactaatgttgagcgataattgtttcatatcttt |
116 |
Q |
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| T |
1513020 |
attatatgatcgaaaatttatagcatgttgttataataaaaattgtttgatgtttcgtataatatttactaatgttgagcgataattgtttcatatcttt |
1512921 |
T |
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| Q |
117 |
ggtaagtagaagattctgcaaccttcttagagaattcagcttcaaccacataaccttccgcttttttctacatcttcttattactatgcgactgatcttg |
216 |
Q |
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| T |
1512920 |
ggtaagtagaagattctgcaaccttcttagagaattcagcttcaaccacataac-----------ttctacatcttcttcttactatgcgactgatcttg |
1512832 |
T |
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| Q |
217 |
taacgcgaaaagcttggaatgtggagttttcgatgaaccaagtaatctat---------------------ccagcatgactgatgttgtcatttcttca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1512831 |
taacgcgaaaagcttggaatgtggagttttcgatgaacgaagtaatctatccgttgaacgagttattcttcccagcatgactgatgttgtcatttcttca |
1512732 |
T |
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| Q |
296 |
tctttacgttttctggatgtt |
316 |
Q |
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||||||||||||||||||||| |
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| T |
1512731 |
tctttacgttttctggatgtt |
1512711 |
T |
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