View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_low_8 (Length: 322)
Name: NF11652_low_8
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 52583631 - 52583328
Alignment:
| Q |
1 |
agtctagaaaagaagcatttccaggagaaatgaaaacacgttagccacatttgttccctaaaaaatgaaataataggtgttagctttacaattgtgtttg |
100 |
Q |
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| T |
52583631 |
agtctagaaaagaagcatttccaggagaaatgaaaacacgttagccacatttgttccctaaaaaatgaaataataggtgttagctttacaattgtgtttg |
52583532 |
T |
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| Q |
101 |
ttggattgaatgaaattagaatgagnnnnnnnnggcacggacctgtgttgaattggaggatttggatggcttgcacggataatccaagcgccccgccgga |
200 |
Q |
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| T |
52583531 |
ttggattgaatgaaattagaatgagaaaaaaaaggcacggacctgtgttgaatcggacgatttggatggcttgcacggataatccaagcgccccgccgga |
52583432 |
T |
|
| Q |
201 |
aagttgatactgcgtgtatgagattttgattgtgaagttgaattgttctcggcaagtaatggcggtttgaaaaaattgcggggagtacagggtcacttat |
300 |
Q |
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| T |
52583431 |
aagttgatactgcgtgtatgagattttgattgtgaagttgaattgttctcggcaagtaatggcggtttgaaaaaattgcggggagtacagggtcacttat |
52583332 |
T |
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| Q |
301 |
ggct |
304 |
Q |
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|||| |
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| T |
52583331 |
ggct |
52583328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 37254172 - 37254228
Alignment:
| Q |
69 |
aataataggtgttagctttacaattgtgtttgttggattgaatgaaattagaatgag |
125 |
Q |
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| T |
37254172 |
aataataggtgttagctttgcaattgtgtttgttggatagaatgaaattagaatgag |
37254228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37253853 - 37253926
Alignment:
| Q |
1 |
agtctagaaaagaagcatttccaggagaaatgaaaacacgttagccacatttgttccctaaaaaatgaaataat |
74 |
Q |
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|||||| |||| ||||||||||| || |||| ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
37253853 |
agtctataaaacaagcatttccaagataaattaaaacacgttagccacatttgttccattgaaaatgaaataat |
37253926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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