View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11652_low_9 (Length: 312)
Name: NF11652_low_9
Description: NF11652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11652_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 45145195 - 45145490
Alignment:
| Q |
1 |
cttgtgaaatcagcttgtggagaacttggtggttatggaattagagttaatagtatatcaccttttggagttgcaacacctctttcgtgtatagcttaca |
100 |
Q |
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| T |
45145195 |
cttgtgaaatcagcttgtggagaacttggtggttatggaattagagttaatagtatatcaccttttggagttgcaacacctctttcgtgtatagcttaca |
45145294 |
T |
|
| Q |
101 |
atcttgaacctcatgaagttgaatctagtagtagttctcatgttaatttgaagggtattgtgttgaaggcaaagcatgttgcagaagcagctttgtttct |
200 |
Q |
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| T |
45145295 |
atcttgaacctcatgaagttgaatctagtagtagttctcatgctaatttgaagggtattgtgttgaaggcaaagcatgttgcagaagcagctttgtttct |
45145394 |
T |
|
| Q |
201 |
tgcttctgatgaagctgtttatatcagtggtcataacttggttgttgatggtggtttctcggtggttcgtaatactccatctgcaatgcctgatgt |
296 |
Q |
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| T |
45145395 |
tgcttctgatgaagctgtttatatcagtggtcataacttggttgttgatggtggtttctcggtggtccgtaatactccatctgcaatgcctgatgt |
45145490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 45152970 - 45153086
Alignment:
| Q |
160 |
gtgttgaaggcaaagcatgttgcagaagcagctttgtttcttgcttctgatgaagctgtttatatcagtggtcataacttggttgttgatggtggtttct |
259 |
Q |
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| T |
45152970 |
gtgttgaagtctaggcatattgcataagcagctttgtttcttgattctgatgaagctatttacatcagtggttataatttggttcttgattgtggcttat |
45153069 |
T |
|
| Q |
260 |
cggtggttcgtaatact |
276 |
Q |
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| T |
45153070 |
ctatggtttgtaatact |
45153086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 45152690 - 45152762
Alignment:
| Q |
179 |
ttgcagaagcagctttgtttcttgcttctgatgaagctgtttatatcagtggtcataacttggttgttgatgg |
251 |
Q |
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|||||||||| ||| ||||||||||||| |||||| | | |||||| ||||| || |||||||| || ||||| |
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| T |
45152690 |
ttgcagaagctgctatgtttcttgcttccgatgaatcggcttatattagtggacaaaacttggtggtcgatgg |
45152762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 12700800 - 12700670
Alignment:
| Q |
144 |
taatttgaagggtattgtgttgaaggcaaagcatgttgcagaagcagctttgtttcttgcttctgatgaagctgtttatatcagtggtcataacttggtt |
243 |
Q |
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|||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
12700800 |
taatctgaagggtgttgtgttgaaggctaagcatattgcagaagcagctttgtttcttgcttctgatgaagctgtttacattagtggtcataatttggta |
12700701 |
T |
|
| Q |
244 |
gttgatggtggtttctcggtggttcgtaata |
274 |
Q |
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| T |
12700700 |
gttgatggtggtttctctgtggttcataata |
12700670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 12700922 - 12700863
Alignment:
| Q |
22 |
gaacttggtggttatggaattagagttaatagtatatcaccttttggagttgcaacacct |
81 |
Q |
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| T |
12700922 |
gaacttggtggttatggaataagagttaatagtgtttcgccttttggagctgcaacacct |
12700863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 38256520 - 38256590
Alignment:
| Q |
190 |
gctttgtttcttgcttctgatgaagctgtttatatcagtggtcataacttggttgttgatggtggtttctc |
260 |
Q |
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| T |
38256520 |
gctttgtttcttgcatctgatgaatctgcttatattagtggacacaacttggtcgttgatggaggcttctc |
38256590 |
T |
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