View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_high_1 (Length: 774)
Name: NF11653_high_1
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 27065367 - 27065002
Alignment:
| Q |
19 |
cgaagtgtgtcattggatctttgagaatgacatgacttggagctctgccgactaaagtagcatctccactctgaagtctatatgtttttatttctatgtt |
118 |
Q |
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| T |
27065367 |
cgaagtgtgtcattggatctttgagaatgacatgacttggagctctgccgactaaagtagcatctccactctgaagtcaatatgtttttatttctatgtc |
27065268 |
T |
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| Q |
119 |
gtgtcaagtaggtagttttttgtttccatgtttagaaataaatggtttttcggtttcaagaaaatgtattatgtattatttatcaacttaatgtgtgcat |
218 |
Q |
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| T |
27065267 |
gtgtcaagtaagtagttttttgtttctatgtttagaaataaatggtttttccgtttcaagaaaatgtactatgtattatttatcaacttaatgtgtgcat |
27065168 |
T |
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| Q |
219 |
gtttggattgaatgtgagtccnnnnnnnntataatgtgccgctataattttgattacatttgtttaacttcaacaaaatcacacgtta-----------t |
307 |
Q |
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| T |
27065167 |
gtttggattgaatgtgagtcccaaaaaaatataatgtgtcgctgtaattttgattacatttgtttaacttcaacaaaatcacacgttatagtcatcattt |
27065068 |
T |
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| Q |
308 |
cgtcaaacttccaaagagacactatgactttctcttatgcaagtgtgttacatatgagttcctaat |
373 |
Q |
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| T |
27065067 |
cgtcaaacttccaaacacacgctatgactttctcttatgcaagtgtgttacatataagttcctaat |
27065002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 27059901 - 27059816
Alignment:
| Q |
366 |
ttcctaattccaacccaaaacaccgaagaggtttatgacgccccattttgtttaacaaagatctaacacctccataatatccacaa |
451 |
Q |
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| T |
27059901 |
ttcctaattccaacccaaaacaccgaagacgtttatgacgccccattttgtttaacacagttctaatacctccagaatatccacaa |
27059816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 468 - 540
Target Start/End: Complemental strand, 32329717 - 32329645
Alignment:
| Q |
468 |
acacccttacgtggtatacccctctcctacaccctcccacttgtcataataaagtataaaaaaagccagctca |
540 |
Q |
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| T |
32329717 |
acacccttacatggtgtacccctctcatacaccctcccacttgtcacaataaaatattaaaaaagccagctca |
32329645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 27079083 - 27079016
Alignment:
| Q |
20 |
gaagtgtgtcattggatctttgagaatgacatgacttggagctctgccgactaaagtagcatctccac |
87 |
Q |
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| T |
27079083 |
gaagtgtgtcattggatctttgagaatgacatgacctggactactaccgactaaagcagcatttccac |
27079016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 560 - 774
Target Start/End: Complemental strand, 44682368 - 44682153
Alignment:
| Q |
560 |
ctctcattcagcattcagttttcttt-aacctttgtcacttatccaaccacccgttcatcttcaccaccaccagcggccacatccaccaccgtcctccgc |
658 |
Q |
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| T |
44682368 |
ctctcattcagcattcagttttctttcaacctttgtcacttatccaaccacccattcatgttcaccaccaccagcggccacatccatcaccgtcctccgc |
44682269 |
T |
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| Q |
659 |
cgtcttcaacctcaaatcctaccaccaccaccgtcgtcaccgtccaaagactcagatttcacaactaccgtcctcatgccaacccttagatccaccacta |
758 |
Q |
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| T |
44682268 |
cgtcttcaacctcaaatcctaccaccaccaccgtcgtcaccgtccaaagactcagatctcacaactgtcgtcctcatgccgacccttagatccaccactg |
44682169 |
T |
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| Q |
759 |
tcgtcaccaccgtcgc |
774 |
Q |
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| T |
44682168 |
tcgtcgccaccgtcgc |
44682153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 542
Target Start/End: Complemental strand, 44682496 - 44682405
Alignment:
| Q |
451 |
agagagttgataggtaaacacccttacgtggtatacccctctcctacaccctcccacttgtcataataaagtataaaaaaagccagctcaac |
542 |
Q |
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| T |
44682496 |
agagagctgataggtaaacacccttacgtggtgtacccctctcttacaccctcccacttgtcacaataaaatataaaaaaagccagctcaac |
44682405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 673
Target Start/End: Original strand, 1493796 - 1493846
Alignment:
| Q |
623 |
ccaccaccagcggccacatccaccaccgtcctccgccgtcttcaacctcaa |
673 |
Q |
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| T |
1493796 |
ccaccaccaccggccacatccaccatcgttatccgtcgtcttcaacctcaa |
1493846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 673
Target Start/End: Original strand, 27008247 - 27008297
Alignment:
| Q |
623 |
ccaccaccagcggccacatccaccaccgtcctccgccgtcttcaacctcaa |
673 |
Q |
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| T |
27008247 |
ccaccaccaccggccacatccaccaacgttatccgtcgtcttcaacctcaa |
27008297 |
T |
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