View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_high_10 (Length: 422)
Name: NF11653_high_10
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_high_10 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 28928 - 29331
Alignment:
| Q |
18 |
atgcctaatccgaggagtatccgtcatgactc---tcttacaagtaattaacccaatcacaaaactggtaaagcatatgtgtccgttttccttctgctgt |
114 |
Q |
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|||||||||||| ||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28928 |
atgcctaatccggggagtgtccgttatgactcatttgttacaagtaattaacccaatcacaaaactggtaaagcatatgtgtccgttttccttctgctgt |
29027 |
T |
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| Q |
115 |
atgtaaacccctaaattaaccttgagatcaaattggttaagcactttttaaaaattaaaatgttaaatattttattgtttcaatttataacagggattgt |
214 |
Q |
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| T |
29028 |
atgtaaacccctaaattaaccttgagatcaaattggttaagcacttttttaaaattaaaatgttaaatattttattgtttcaatttataacagggattgt |
29127 |
T |
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| Q |
215 |
cgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagcttaaacacattagaaatttaattgaagttac |
314 |
Q |
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| T |
29128 |
cgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagcttaaacacattagaaatttaattgaagttac |
29227 |
T |
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| Q |
315 |
ataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataacatattatataatgtgcatttgatcatatatatgtc |
411 |
Q |
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| T |
29228 |
ataacttttgtcacaattaatccaaaatccttagtatgaaccttacatttaacttgccaaataacatattatataatgtgcatttgatcatatatatgtg |
29327 |
T |
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| Q |
412 |
tgtg |
415 |
Q |
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|||| |
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| T |
29328 |
tgtg |
29331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 185 - 415
Target Start/End: Original strand, 12236 - 12469
Alignment:
| Q |
185 |
tttattgtttcaatttataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagct |
284 |
Q |
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| T |
12236 |
tttattggttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgcctttaatgct |
12335 |
T |
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| Q |
285 |
taaacacattagaaatttaattgaagttacataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataacatatt |
381 |
Q |
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| T |
12336 |
taaacacattagaaatttaattgaagttacataacttttgtcagaagcaatccaaaatccttagtatgaaccttacatttaacttgccaaataacatatt |
12435 |
T |
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| Q |
382 |
atataatgtgcatttgatcatatatatgtctgtg |
415 |
Q |
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| T |
12436 |
atataatgtgcatttgatcatatatatgtctgtg |
12469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 185 - 415
Target Start/End: Original strand, 19973 - 20206
Alignment:
| Q |
185 |
tttattgtttcaatttataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagct |
284 |
Q |
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| T |
19973 |
tttattggttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgcctttaatgct |
20072 |
T |
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| Q |
285 |
taaacacattagaaatttaattgaagttacataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataacatatt |
381 |
Q |
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| T |
20073 |
taaacacattagaaatttaattgaagttacataacttttgtcagaagcaatccaaaatccttagtatgaaccttacatttaacttgccaaataacatatt |
20172 |
T |
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| Q |
382 |
atataatgtgcatttgatcatatatatgtctgtg |
415 |
Q |
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| T |
20173 |
atataatgtgcatttgatcatatatatgtctgtg |
20206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 36575407 - 36575513
Alignment:
| Q |
170 |
taaaatgttaaatattttattgtttcaatttataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagta |
269 |
Q |
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||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| | |||||| |
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| T |
36575407 |
taaaatgttaagtattttattgtttcaattggtaacaggtattgtcacaaataatggcacaggagaagtttatgttgatcaatatcatcgcaataaagta |
36575506 |
T |
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| Q |
270 |
agcacct |
276 |
Q |
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| T |
36575507 |
agcacct |
36575513 |
T |
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