View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_high_11 (Length: 378)
Name: NF11653_high_11
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 29416663 - 29416470
Alignment:
| Q |
1 |
agtctttgtaagataacaattcataaagaaaaccttcttccttttggcggaaaaagtatttaataggcttttttctgggttgcactttggatcttgagca |
100 |
Q |
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| T |
29416663 |
agtctttgtaagatagcaattcataaagaaaaccttcttccttttggaggaaaaagtatttaataggcttttttctgggtttcactttggatcttgagca |
29416564 |
T |
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| Q |
101 |
tcttgtgctaggatgtgtttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
194 |
Q |
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| T |
29416563 |
tcttgtgctaggatgtgtttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
29416470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 24655731 - 24655971
Alignment:
| Q |
11 |
agataacaattcataaagaaaaccttcttccttttggcggaaaaagtatttaataggcttt--tttctgggttgcactttggatcttgagcatcttgtgc |
108 |
Q |
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| T |
24655731 |
agataacaattcataaggaaaaccttcttccttttgaaggaaaaagtatttaataggcattgttttttgggtttcactttggatcttgagcatcttgtgc |
24655830 |
T |
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| Q |
109 |
taggatgtgtttctaactatttg-----------tgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatcaatg |
197 |
Q |
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| T |
24655831 |
taagatgtgtttctaactatttggcctacgtttgtgtcattgaactaggatgtttaattttacgtcattattggattatgttactgaggtagaatcaatg |
24655930 |
T |
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| Q |
198 |
tactgatgcagagaatacaatggactgttaatgtcatctgt |
238 |
Q |
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| T |
24655931 |
tactgatgcagagaatacaatggactgttaatgtcatctgt |
24655971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 231 - 360
Target Start/End: Complemental strand, 29416472 - 29416343
Alignment:
| Q |
231 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
330 |
Q |
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| T |
29416472 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
29416373 |
T |
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| Q |
331 |
tactgttctatcattttccaaccaatgtga |
360 |
Q |
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| T |
29416372 |
tactgttctatcattttccaaccaatgtga |
29416343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 24655955 - 24656048
Alignment:
| Q |
250 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatca |
343 |
Q |
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| T |
24655955 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacttgtttactgttctatca |
24656048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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