View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_high_6 (Length: 514)
Name: NF11653_high_6
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 281 - 509
Target Start/End: Complemental strand, 569852 - 569624
Alignment:
| Q |
281 |
aatttaaacaatattgacattattaagcaatgatttgcaagatgtttgcttgaaatagacgggtttatcatcagaagttcttaaatctttcaattatttt |
380 |
Q |
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| T |
569852 |
aatttaaacaataatgacattattaagcaataatttgcaagatgtttgcttgaaataaacgggtttatcatcagaagttcttaaatctttcaataatttt |
569753 |
T |
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| Q |
381 |
ctttttctattacgctagattacatggaaataaagggttttacgttgcaaaaactacatgtggctatcccctacttgcatgtacggctaatagttctgaa |
480 |
Q |
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| T |
569752 |
ctttttctattacgctaggttacattgaactaaagggttttatgttgcaaaaactacatgtggctatcacttacttgcatgtacggctaatagttctgac |
569653 |
T |
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| Q |
481 |
tcaattttgtatcatagcacatctctgct |
509 |
Q |
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| T |
569652 |
tcaattttgtatcataccacatctctgct |
569624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 570001 - 569869
Alignment:
| Q |
92 |
ctccaagaaattactttttaaaataaatttgtgcataggcgcatcagtctcctcgtataattgtttgagttatcgtgtaatgcaaacaattgggtgctat |
191 |
Q |
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| T |
570001 |
ctccaagaaattactttttaaaataaatttgtgtatatgctcatcagtctcctcgtataattgtttgagtta--ctgcaatgcaaacaattggatgctat |
569904 |
T |
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| Q |
192 |
atgcattttgaattagtattgtttttcattgcttt |
226 |
Q |
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| T |
569903 |
atgcagtttgaattagtattgtttttcattgcttt |
569869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 8184425 - 8184486
Alignment:
| Q |
207 |
gtattgtttttcattgctttcctttgaattatattactttgataagattcttgtgccatact |
268 |
Q |
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| T |
8184425 |
gtattgcttttcattgctttgccttgatttatattacatgtataagattcttgtgtcatact |
8184486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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