View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_high_9 (Length: 434)
Name: NF11653_high_9
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 40080938 - 40081358
Alignment:
| Q |
1 |
tggaagagaatgcttgatatttactgtctttgatgattgatatgaaacagaatcaacagtctaagtatcttccaaaagaatgcaacaagaaactaccaac |
100 |
Q |
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| T |
40080938 |
tggaagagaatgcttgatatttactgtctttgatgattgatatgaaacagaatcaacagtctaagtagcttccaaaagaatgcaacaagaaactaccaac |
40081037 |
T |
|
| Q |
101 |
tggaccctccaagagtaagagatccctttattactgatttatttattttccatagaaaattaggatgaatcataaatgcaattgtttgagagtgaggtat |
200 |
Q |
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| T |
40081038 |
tggaccctccaagagtaagagatccctttattactgatttatttattttccatagaaaattaggatgaatcataaatgcaattgtttgagagtgaggtat |
40081137 |
T |
|
| Q |
201 |
gcttctgacatgaagaataaattattatgattggcatttattgatgcaatacaagagtttgaatcatgagagtctaatg--nnnnnnnnnnctctatttt |
298 |
Q |
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| T |
40081138 |
gcttctgacatgaagaataaattattatgattggcatttattgatgcaatacaagagtttgaatcatgagagtctaatgaaaaaaaaaacactctatttt |
40081237 |
T |
|
| Q |
299 |
caaacaaaaaagaagagcaagaaacaccctccannnnnnnctccctatttctccttgaacatcacctatcacatttataattcctaaactacaacaatgg |
398 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081238 |
caaacaaaaaagaagagcaagaaacaccctccattttttactccctatttctccttgaacatcacctatcacatttataattcctaaactacaacaatgg |
40081337 |
T |
|
| Q |
399 |
aggaaatagagaagatcctct |
419 |
Q |
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|| |||||||||||||||||| |
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| T |
40081338 |
agaaaatagagaagatcctct |
40081358 |
T |
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