View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11653_low_12 (Length: 351)
Name: NF11653_low_12
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 17029934 - 17030262
Alignment:
| Q |
5 |
cgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17029934 |
cgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgag |
17030033 |
T |
|
| Q |
105 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatgtccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17030034 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
17030133 |
T |
|
| Q |
205 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgtt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17030134 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgtt |
17030233 |
T |
|
| Q |
305 |
ctccaatggaggtttgccatcaagcctaa |
333 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
17030234 |
ctccgatggaggtttgccatcaagcctaa |
17030262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 17048272 - 17048600
Alignment:
| Q |
5 |
cgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048272 |
cgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgag |
17048371 |
T |
|
| Q |
105 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatgtccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048372 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
17048471 |
T |
|
| Q |
205 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgtt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048472 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgtt |
17048571 |
T |
|
| Q |
305 |
ctccaatggaggtttgccatcaagcctaa |
333 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
17048572 |
ctccgatggaggtttgccatcaagcctaa |
17048600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 16978062 - 16978390
Alignment:
| Q |
5 |
cgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978062 |
cgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgag |
16978161 |
T |
|
| Q |
105 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatgtccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978162 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
16978261 |
T |
|
| Q |
205 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgtt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16978262 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgtccacagttggagtcgtt |
16978361 |
T |
|
| Q |
305 |
ctccaatggaggtttgccatcaagcctaa |
333 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
16978362 |
ctccgatggaggtttgccatcaagcctaa |
16978390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 17109395 - 17109717
Alignment:
| Q |
6 |
gactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgagc |
105 |
Q |
| |
|
||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||||||||| | |
|
|
| T |
17109395 |
gactctctaacgaccttccctctcaaactgttcccgaatcttgacactcttgatgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaac |
17109494 |
T |
|
| Q |
106 |
atcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatgtccaaaaggaggattgtctacaccaaggctgcaacactttgatatttc |
205 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||| |||| ||||| || || ||| || |||| |
|
|
| T |
17109495 |
atcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttcagcagttttatctttc |
17109594 |
T |
|
| Q |
206 |
caaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgttc |
305 |
Q |
| |
|
||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| ||| ||| |
|
|
| T |
17109595 |
aaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttc |
17109694 |
T |
|
| Q |
306 |
tccaatggaggtttgccatcaag |
328 |
Q |
| |
|
||| | |||||||||| ||||| |
|
|
| T |
17109695 |
tccgctagaggtttgccttcaag |
17109717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 17024305 - 17024547
Alignment:
| Q |
41 |
aaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgt |
140 |
Q |
| |
|
||||||||||| ||||| | ||||||||| || || ||||||||||| ||| |||||||||| ||||||| ||| | || |||||||||| | ||||| |
|
|
| T |
17024305 |
aaatcttgattatctcggcgtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaattaggaagtgt |
17024404 |
T |
|
| Q |
141 |
cctaaatttgcatcatgtccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatt-----taaaatcacttcctaa |
235 |
Q |
| |
|
||| | |||| | ||| || || | ||||| |||| | ||||| | ||||||||| |||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
17024405 |
ccttattttggaacattacccaaggaaggatcgtctgctccaagtttacaacactttaatattttcaaataggagaattcaatttaaaatcacttcctaa |
17024504 |
T |
|
| Q |
236 |
atgcatgcatgtcctccttccatctctttataagctatctata |
278 |
Q |
| |
|
|||||||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
17024505 |
atgcatgcatatcttctttccatctcttcataacctatctata |
17024547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 17089577 - 17089819
Alignment:
| Q |
41 |
aaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgt |
140 |
Q |
| |
|
||||||||||| ||||| | ||||||||| || || ||||||||||| ||| |||||||||| ||||||| ||| | || |||||||||| | ||||| |
|
|
| T |
17089577 |
aaatcttgattatctcggcgtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaattaggaagtgt |
17089676 |
T |
|
| Q |
141 |
cctaaatttgcatcatgtccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatt-----taaaatcacttcctaa |
235 |
Q |
| |
|
||| | |||| | ||| || || | ||||| |||| | |||| | ||||||||| |||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
17089677 |
ccttattttggaacattacccaaggaaggatcgtctgctccaaatttacaacactttaatattttcaaataggagaattcaatttaaaatcacttcctaa |
17089776 |
T |
|
| Q |
236 |
atgcatgcatgtcctccttccatctctttataagctatctata |
278 |
Q |
| |
|
|||||||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
17089777 |
atgcatgcatatcttctttccatctcttcataacctatctata |
17089819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 278
Target Start/End: Original strand, 17035072 - 17035309
Alignment:
| Q |
46 |
ttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaa |
145 |
Q |
| |
|
|||||| ||||| | ||||||||| || || ||||||||||| ||| |||||||||| ||||||| ||| | || |||||||||| | |||||||| | |
|
|
| T |
17035072 |
ttgattatctcggcgtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaattaggaagtgtcctta |
17035171 |
T |
|
| Q |
146 |
atttgcatcatgtccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatt-----taaaatcacttcctaaatgca |
240 |
Q |
| |
|
|||| | ||| || || | ||||| |||| | ||||| | ||||||||| |||||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
17035172 |
ttttggaacattacccaaggaaggatcgtctgctccaagtttacaacactttaatattttcaaataggagaattcaatttaaaatcacttcctaaatgca |
17035271 |
T |
|
| Q |
241 |
tgcatgtcctccttccatctctttataagctatctata |
278 |
Q |
| |
|
||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
17035272 |
tgcatatcttctttccatctcttcataacctatctata |
17035309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 14313810 - 14313860
Alignment:
| Q |
283 |
attgtccacagttggagtcgttctccaatggaggtttgccatcaagcctaa |
333 |
Q |
| |
|
|||||||||| |||||| |||||| ||||||||||||||| ||||||||| |
|
|
| T |
14313810 |
attgtccacaattggaggtgttctctaatggaggtttgccaccaagcctaa |
14313860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University