View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_13 (Length: 315)
Name: NF11653_low_13
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 41785761 - 41785447
Alignment:
| Q |
1 |
attgctcatgacacactctctgtgttcctcgacttttgcagccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccact |
100 |
Q |
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| T |
41785761 |
attgctcatgacacactctctgtgttcctcgactttcgcagccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccact |
41785662 |
T |
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| Q |
101 |
ggtgagtgtgtttcctcacttgcagttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaa |
200 |
Q |
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| T |
41785661 |
ggtgagtgtgtttcctcacttgcatttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaa |
41785562 |
T |
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| Q |
201 |
tcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcg |
300 |
Q |
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| T |
41785561 |
tcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcg |
41785462 |
T |
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| Q |
301 |
gatattgtcttccat |
315 |
Q |
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| T |
41785461 |
gatattgtcttccat |
41785447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 10834795 - 10834683
Alignment:
| Q |
187 |
tttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctc |
286 |
Q |
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| T |
10834795 |
tttctctcccagaatcttgttctcttgctcataccttaactttgttaatttgcaactgtttttgttttcattgttcagctgttctgccaaatggatcctc |
10834696 |
T |
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| Q |
287 |
tggtgcaacaagc |
299 |
Q |
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| T |
10834695 |
tagtgcaacaagc |
10834683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 2281450 - 2281542
Alignment:
| Q |
194 |
ccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctc |
286 |
Q |
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| T |
2281450 |
ccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttttcgttattcagttgttctgctacgtggatcctc |
2281542 |
T |
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