View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_16 (Length: 249)
Name: NF11653_low_16
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2393234 - 2393459
Alignment:
| Q |
1 |
atcaaggtgactttgaaactgaatataggattaaattattgtgttttgttatgaatcggattcnnnnnnnttaataagtggtgacaaaatcatataatat |
100 |
Q |
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| T |
2393234 |
atcaaggtgactttgaaactgaatataggattaaattattgtgtattgttatgaatcggattcaaaaaatttaataagtggtaacaaaatcatataatat |
2393333 |
T |
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| Q |
101 |
aaataaatgtttatgtagaaatacatcaacacaaacgtaattcatttagatgtcgaaataaatgaactctaatgtctccgtatgcttagctcaattgcat |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2393334 |
aaataaatgtttatgtagaaatacgtcaacacaaacgtaattcatttagatgtcgagataaatgaattctaatgtctccgtatgcttagctcaattgcat |
2393433 |
T |
|
| Q |
201 |
aatatatacatagttgagattagaac |
226 |
Q |
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||||||| ||||||||||||||||| |
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| T |
2393434 |
aatatatgtatagttgagattagaac |
2393459 |
T |
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