View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_17 (Length: 239)
Name: NF11653_low_17
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 11359828 - 11359677
Alignment:
| Q |
1 |
ttgacattcatagatgcatagcttaacaaaaagctcactatctgaaatagataggataaccatgtgtcaagaaaactacgaacacgacataattatacat |
100 |
Q |
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| T |
11359828 |
ttgacattcatagatgcatagcttaacaaaaagctcactatctgaaatagataggataaccatgtgtcaagaaaactacgaacaccacataattatacat |
11359729 |
T |
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| Q |
101 |
aggtctaaattatggataaactagtttataacaaaactgaagcaaagcaacc |
152 |
Q |
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| T |
11359728 |
aggtctaaattatggataaactagtttataacaaaactgaagcaaagcaacc |
11359677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 11359324 - 11359249
Alignment:
| Q |
148 |
caaccatgtggtaaaaaacagaaatcaaatatggtttaattgacctgcgaacgagctttccgagtagccatgtgaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11359324 |
caaccatgtggtaaaaaacagaaatcaaatatggtttaattgacctgcgaacgagctttccgagtagccatgtgaa |
11359249 |
T |
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