View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_2 (Length: 719)
Name: NF11653_low_2
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 400 - 704
Target Start/End: Complemental strand, 37189160 - 37188856
Alignment:
| Q |
400 |
tactctgttttcattctttctctgccaaaaacacaccaaattttcttcttttctgcactttctgttcactctgattcttctggaagtgggtttcttcggt |
499 |
Q |
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| T |
37189160 |
tactctgttttcattctttctctgccaaaaacacaccaaattttcttcttttctgcactttctgttcactctgattcttctggaagtgggtttcttcggt |
37189061 |
T |
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| Q |
500 |
tttgttctggaaaccaagttttgaacatggtttttggtttctaagttccatgtagaagaaaatattttgagnnnnnnntagtagtatataaagaaaataa |
599 |
Q |
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| T |
37189060 |
tttgttctggaaaccaagttttgaacatggtttttggtttctaagttccatgtagaagaaaatattttgagaaaaaaatagtagtatataaagaaaataa |
37188961 |
T |
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| Q |
600 |
agctatgacttggaaaagtagaggagaggttgttcctagaagctttatgtcacagaaatggatgattttcttgtgtattggaagcttctgtgctggaatg |
699 |
Q |
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| T |
37188960 |
agctatgacttggaaaagtagaggagaggttgttcctagaagctttatgtcacagaaatggatgattttcttgtgtattggaagcttctgtgctggaatg |
37188861 |
T |
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| Q |
700 |
ttttt |
704 |
Q |
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| T |
37188860 |
ttttt |
37188856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 37189545 - 37189225
Alignment:
| Q |
16 |
acccacgtgaagtgatggaatagttgtttccattgcacatattctccacgagagaaaagcatggctcatgtttatggccatgaagatgggaagggcatta |
115 |
Q |
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| T |
37189545 |
acccatgtgaagtgatggaatagttgtttccattgcacatattctccacgagagaaaagcatggctcatgtttatggccatgaagatgggaagggcatta |
37189446 |
T |
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| Q |
116 |
atgtcataacaataaacagttactgaagttgcactaaattaagaaaggaccctacaagggaccatttggtaaatatataagtcttat-aaactgagcggt |
214 |
Q |
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| T |
37189445 |
atgtcataacaataaacagttactgaagttgcaataaattaagaaaggaccctacaagggaccatttggtaaatatataagtcttataaaactgagcggt |
37189346 |
T |
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| Q |
215 |
tagaaagtcttcttgcttgtgttgtattcaacttcccttacctgcaaagacagacacagaannnnnnnnnnnnnacacaaacataacacaaagcaaggaa |
314 |
Q |
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| T |
37189345 |
tagaaagtcttcttgcttgtgttgtattcaacttcccttacctgcaaagacagacacagaaagagagagagagaacacaaacataacacaaagcaaagaa |
37189246 |
T |
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| Q |
315 |
caagtataacgtggcacatag |
335 |
Q |
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| T |
37189245 |
caagtataacgtggcacatag |
37189225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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