View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_3 (Length: 604)
Name: NF11653_low_3
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 14 - 586
Target Start/End: Original strand, 2064031 - 2064603
Alignment:
| Q |
14 |
caaaggtgaagccaaataacatagtagcaaatgtttacaaagattnnnnnnnnnnnnnttatatcgaaatttataaacctaaatgttaatgtactttacc |
113 |
Q |
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| T |
2064031 |
caaaagtgaagccaaataacatagtagcaaatgtttacaaagattaaaaataaaaaaattatatcgaaatttataaacctaaatgttaatgtactttacc |
2064130 |
T |
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| Q |
114 |
aatcatacccctgaaagccaccgaaacatttcactaatttcttcaccaattctgttaccttcaacgtcataatcaaccggttcaattctgcgactacttc |
213 |
Q |
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| T |
2064131 |
aatcatacccctgaaagccaccgaaacatttcactaatctcttcaccaattctgttaccttcaacgtcataatcaaccggttcaattctgcgactacttc |
2064230 |
T |
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| Q |
214 |
cacctccggcgaagaatcttccagaactccgaaacgacgccgttcgcgatgaaatcgaagccgatagtctgtccacgtaatccttcaaccaatgtccact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064231 |
cacctccggcgaagaatcttccagaactccgaaacgacgccgttcgcgatgaaatcgaagccgatagtctgtccacgtaatccttcaaccaatgtccact |
2064330 |
T |
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| Q |
314 |
tccagcaacttcaccagcgatagtattttcatgtgtcatagatgaatcctccgataccggaatgtgaatgtctttctgatcggaaacacttctccggtga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064331 |
tccagcaacttcaccagcgatagtattttcatgtgtcatagatgaatcctccgataccggaatgtgaatgtctttctgatcggaaacacttctccggtga |
2064430 |
T |
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| Q |
414 |
tcttgcgtaaacgaaacctccgaaggctcaactacataatactcaaacgatccaattgaataagaccttgaatcgccaccggtagtaacggcgtcgggat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064431 |
tcttgcgtaaacgaaacctccgaaggctcaactacataatactcaaacgatccaatcgaataagaccttgaatcgccaccggtagtaacggcgtcgggat |
2064530 |
T |
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| Q |
514 |
tgggaagattgtttccacggcggcttatatttccgatatcaactcggaaactgtctgaagaagttgatcggag |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064531 |
tgggaagattgtttccacggcggcttatatttccgatatcaactcggaaactgtctgaagaagttgatcggag |
2064603 |
T |
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