View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_4 (Length: 550)
Name: NF11653_low_4
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 12831933 - 12831402
Alignment:
| Q |
1 |
aacgagatgagaaacctattcggtcgaaagattacaaagaatgtaagttcatagaacttgaccctagagaagagaacgagctcatgccacagccacatct |
100 |
Q |
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| T |
12831933 |
aacgagatgagaagcctattcggtcgaaagattacaaagaatgtaagttcatagaacttgaccctagagaagagaacgagctcatgccacagccacatct |
12831834 |
T |
|
| Q |
101 |
cttctagaaattgaaggaagtagagatagctggtcccaaaaggcagcaaaaatcgacacatagttaacaattgaggaaaaaatcattttaatccaaagat |
200 |
Q |
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| T |
12831833 |
cttctagaaattgaagga-gtagagatagctggtcccaaaaggcagcaaaaatcgacacatagttaacaattgaggaaaaaatcatcttagtccaaagat |
12831735 |
T |
|
| Q |
201 |
taaggaacagtttggacttatttgcatgaagttcagctgatatgtctcgcagtctcacgtcgatccaaatgtagttttctcatcaattggccattgatca |
300 |
Q |
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| T |
12831734 |
tacggaacaatttggacttatttgcatgaagttcagctgatatgtctcgcagtctcacatcgatccaaatgtagttttctcatcaattggccattgatca |
12831635 |
T |
|
| Q |
301 |
cactgtatatattcgtttttgaacgatcaatgttaataatcagttgttaaattaatatacgaacaataacttcaccgnnnnnnnnnnnnngtgctaacct |
400 |
Q |
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|| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12831634 |
cattgtatacattcatttttgaacgaacaatgttaataatcagttgttaaattaatatacgaacaataacttcactgttttttcttttctgtgctaacct |
12831535 |
T |
|
| Q |
401 |
ttactagataatttttgtttggttacacaaacccattcactatataattgaatgaatggaaacatttgttttttaatcaaaaacctaaatatggacttca |
500 |
Q |
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| T |
12831534 |
ttactatataatttttttttggttacacaaaccccttcactagataattgaatgaatggaaacatttgttttttaatcaaaaacctaaatatggacttca |
12831435 |
T |
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| Q |
501 |
attaattcttgaagtttcatttttagtcgaaaa |
533 |
Q |
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| T |
12831434 |
attaattcttgaagtttcatttttagtcgaaaa |
12831402 |
T |
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