View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11653_low_5 (Length: 539)
Name: NF11653_low_5
Description: NF11653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11653_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 42564838 - 42564461
Alignment:
| Q |
18 |
ggaacccaagacagtttacatgtttataatgagagaaatcacagctccttaagaagtcatttggtgagttctgacaccggcttaaaggagtctttgccac |
117 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42564838 |
ggaactcaagacagtttatatgtttataatgagagaaatcacagctccttaagaagtcatttggtgagttctgacaccggcttaaaggagtctttgccac |
42564739 |
T |
|
| Q |
118 |
tttatgagaaaacctcaaaaaacatcagtgtcaacagaaaaccagtaaatacatcttattattcaagaaatagaggtcttgtacaacaggatcaaaatgg |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42564738 |
tttatgaaaaaacctcaaaaaacatcagtgtcaacagaaaaccagtaaatacatcttattattcaagaaatagaggtcctgtacaacaggatcaaaatgg |
42564639 |
T |
|
| Q |
218 |
tagacatatgcccagttctaagctgcagaaacacacggaaaatgataataatgtttgaaggaaagcccctcataagcatttccttttatattaactcaat |
317 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42564638 |
tagacatatgaccagttctaagctgcagaaacacacggaaaatgatagtaatgtttgaaggaaagcccctcataagcattcccttttatattaactcaat |
42564539 |
T |
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| Q |
318 |
ctgtatgtatcttttataatatataagggtggagttgatgacaaagttaatagtcatccaagtccaaagttaaatttg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42564538 |
ctgtatgtatcttttataatatataagggtggagttgatgacaaagttaatagtcatccaagtccaaagttaaatttg |
42564461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 25 - 271
Target Start/End: Complemental strand, 50408653 - 50408398
Alignment:
| Q |
25 |
aagacagtttacatgtttataatgagagaaatcacagctccttaagaagtcatttggtgagttctgacaccggcttaaaggagtctttgccactttatga |
124 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50408653 |
aagacagtttacatgtttataatgagagaaatcatagccccttaagaagtcatttggtgagttctgacatcggcttaaaggagtctttgccactttatga |
50408554 |
T |
|
| Q |
125 |
gaaaacctcaaaaaacatcagtgtcaacagaaaaccagtaaatacatcttattattcaagaaatagaggtcttgtacaacagg---------atcaaaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| | |
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| T |
50408553 |
gaaaacctcaaaaaacatcagtgtcaacagaaaaccagtaaatacatcttattattcaagaaataaaggttcagtacaacaggatcagaggcatcaaagt |
50408454 |
T |
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| Q |
216 |
ggtagacatatgcccagttctaagctgcagaaacacacggaaaatgataataatgt |
271 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
50408453 |
ggtagacatatgcccggttctaagctgcaaaaacacacggaaaatgataataatgt |
50408398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 40914035 - 40913981
Alignment:
| Q |
267 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatctgt |
321 |
Q |
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|||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
40914035 |
aatggttgaaggaaagcccctcagaagcatttccttttattttaactcaatctgt |
40913981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 12718422 - 12718473
Alignment:
| Q |
267 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatc |
318 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
12718422 |
aatggttgaaggaaagcccctcagaagcatttccttttagtctaactcaatc |
12718473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 2887288 - 2887342
Alignment:
| Q |
267 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatctgt |
321 |
Q |
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|||| |||||||||||||| ||| ||| |||||||||||| ||||||||||||| |
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| T |
2887288 |
aatggttgaaggaaagcccttcagaagtatttccttttattctaactcaatctgt |
2887342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 3147249 - 3147195
Alignment:
| Q |
267 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatctgt |
321 |
Q |
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|||| |||||||||||||| ||| ||| |||||||||||| ||||||||||||| |
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| T |
3147249 |
aatggttgaaggaaagcccttcagaagtatttccttttattctaactcaatctgt |
3147195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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